Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 64342 | 0.68 | 0.73823 |
Target: 5'- gGACuGCCAcUCGuugcGGGCGgugcccaUCAGCGAGGu -3' miRNA: 3'- gCUG-CGGU-AGU----UCCGCg------AGUUGCUCC- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 51775 | 0.68 | 0.73823 |
Target: 5'- gCGAgCGCCuugaggUAuucGGCGCUCGGCGGGu -3' miRNA: 3'- -GCU-GCGGua----GUu--CCGCGAGUUGCUCc -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 15569 | 0.68 | 0.73823 |
Target: 5'- gGugGCCAcccUCGGGGCcaGCgCGACGGGc -3' miRNA: 3'- gCugCGGU---AGUUCCG--CGaGUUGCUCc -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 4105 | 0.68 | 0.73823 |
Target: 5'- uGAUGCCAaaccUCGGcGGC-CUCGACGuGGc -3' miRNA: 3'- gCUGCGGU----AGUU-CCGcGAGUUGCuCC- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 63288 | 0.69 | 0.706828 |
Target: 5'- uCGAUGCCuUCAc-GUGCgagCAGCGGGGu -3' miRNA: 3'- -GCUGCGGuAGUucCGCGa--GUUGCUCC- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 32223 | 0.69 | 0.685522 |
Target: 5'- cCGACGCCucggcacCGAGcUGCUCGAUGAGa -3' miRNA: 3'- -GCUGCGGua-----GUUCcGCGAGUUGCUCc -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 41479 | 0.69 | 0.685522 |
Target: 5'- uGACGCCGUCGAGcaCGacCUCGGCGGuGGc -3' miRNA: 3'- gCUGCGGUAGUUCc-GC--GAGUUGCU-CC- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 48424 | 0.69 | 0.674789 |
Target: 5'- gCGAcCGCCAccacCGAGGCGCgaggCAGCGGc- -3' miRNA: 3'- -GCU-GCGGUa---GUUCCGCGa---GUUGCUcc -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 64019 | 0.69 | 0.674789 |
Target: 5'- -cGCGCC--CGAGGCGCg--GCGAGGc -3' miRNA: 3'- gcUGCGGuaGUUCCGCGaguUGCUCC- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 61495 | 0.69 | 0.674789 |
Target: 5'- -cGCGaCCGUUGAGGCGCUCggUGugccGGu -3' miRNA: 3'- gcUGC-GGUAGUUCCGCGAGuuGCu---CC- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 27529 | 0.69 | 0.674789 |
Target: 5'- -cACGCCGUCGAGGCcccaCGGCGGGa -3' miRNA: 3'- gcUGCGGUAGUUCCGcga-GUUGCUCc -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 41640 | 0.69 | 0.664018 |
Target: 5'- gCGGUGCCgGUCugcGGGCGCUCggUGAGcGg -3' miRNA: 3'- -GCUGCGG-UAGu--UCCGCGAGuuGCUC-C- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 68864 | 0.7 | 0.642398 |
Target: 5'- uCGACuuGCCcgCGccGGGCGCgcCGAUGAGGu -3' miRNA: 3'- -GCUG--CGGuaGU--UCCGCGa-GUUGCUCC- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 36631 | 0.7 | 0.642398 |
Target: 5'- gCGcCGCCcgCAAGGCccGCgaUCAGCGAGc -3' miRNA: 3'- -GCuGCGGuaGUUCCG--CG--AGUUGCUCc -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 34557 | 0.7 | 0.642398 |
Target: 5'- --uUGCCGUCGGGGCcgaCGGCGAGGu -3' miRNA: 3'- gcuGCGGUAGUUCCGcgaGUUGCUCC- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 16478 | 0.7 | 0.641315 |
Target: 5'- aGAuCGCCGUCAAgGGCGCacccgCGcgcauggccgagaGCGAGGc -3' miRNA: 3'- gCU-GCGGUAGUU-CCGCGa----GU-------------UGCUCC- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 54955 | 0.7 | 0.631569 |
Target: 5'- uCGACGCgucaucguCGUCAAGGCGCUCGuGCa--- -3' miRNA: 3'- -GCUGCG--------GUAGUUCCGCGAGU-UGcucc -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 58786 | 0.7 | 0.631569 |
Target: 5'- -uGCGCCgGUCGAGGCGgugauugcCUCGGCGGGc -3' miRNA: 3'- gcUGCGG-UAGUUCCGC--------GAGUUGCUCc -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 25470 | 0.7 | 0.609923 |
Target: 5'- uGACGaCAUCAugguguucaacaAGGCGCUCGcgcgUGAGGg -3' miRNA: 3'- gCUGCgGUAGU------------UCCGCGAGUu---GCUCC- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 5192 | 0.71 | 0.588351 |
Target: 5'- cCGACGCCGccgccaagcUCAccGCGCUCGcCGAGc -3' miRNA: 3'- -GCUGCGGU---------AGUucCGCGAGUuGCUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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