miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23408 5' -59.3 NC_005259.1 + 43879 0.66 0.540754
Target:  5'- -cCGGCAGCguuGCCGCCGAcauugcccGcgccggcugaucgauGGGCAGCGa -3'
miRNA:   3'- aaGCCGUUG---UGGCGGCU--------C---------------CCUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 36257 0.66 0.536601
Target:  5'- gUCGGCAGCGCCacGCCGGacaGAUugAGCAg -3'
miRNA:   3'- aAGCCGUUGUGG--CGGCUcc-CUG--UCGU- -5'
23408 5' -59.3 NC_005259.1 + 35876 0.66 0.536601
Target:  5'- -aCcGCAGcCGCCGCCGAGGcagaccACGGCGa -3'
miRNA:   3'- aaGcCGUU-GUGGCGGCUCCc-----UGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 56219 0.66 0.533494
Target:  5'- aUCGGUGuaugccagucguCGCCGCCGAccacguuGGGAuCGGCGg -3'
miRNA:   3'- aAGCCGUu-----------GUGGCGGCU-------CCCU-GUCGU- -5'
23408 5' -59.3 NC_005259.1 + 58697 0.66 0.533494
Target:  5'- gUCGGCucguCGCCGCCGccgucaccaucgccGGGGGugucguuggcacCGGCAc -3'
miRNA:   3'- aAGCCGuu--GUGGCGGC--------------UCCCU------------GUCGU- -5'
23408 5' -59.3 NC_005259.1 + 27522 0.66 0.52627
Target:  5'- gUCcGCAcACGCCGUCGAGGccccACGGCGg -3'
miRNA:   3'- aAGcCGU-UGUGGCGGCUCCc---UGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 51401 0.66 0.516014
Target:  5'- -aCGuGUucACAUCGCCGAGGGGcCGGUu -3'
miRNA:   3'- aaGC-CGu-UGUGGCGGCUCCCU-GUCGu -5'
23408 5' -59.3 NC_005259.1 + 18357 0.66 0.50584
Target:  5'- -aCGGCGACAUguggcacaUGcCCGAGGG-CGGUAg -3'
miRNA:   3'- aaGCCGUUGUG--------GC-GGCUCCCuGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 45743 0.66 0.50584
Target:  5'- --aGGCcgcGCACCGCCucGGGGAUgAGCAc -3'
miRNA:   3'- aagCCGu--UGUGGCGGc-UCCCUG-UCGU- -5'
23408 5' -59.3 NC_005259.1 + 31188 0.66 0.495752
Target:  5'- gUCGGCGaggAUGCCGCCGAagaucGGGAU-GCc -3'
miRNA:   3'- aAGCCGU---UGUGGCGGCU-----CCCUGuCGu -5'
23408 5' -59.3 NC_005259.1 + 66051 0.66 0.495752
Target:  5'- -aCGuaGACGCCGCCGuGGGcCuGCu -3'
miRNA:   3'- aaGCcgUUGUGGCGGCuCCCuGuCGu -5'
23408 5' -59.3 NC_005259.1 + 63113 0.67 0.475858
Target:  5'- -aCGGCA--GCCGUCGAGGGugGu-- -3'
miRNA:   3'- aaGCCGUugUGGCGGCUCCCugUcgu -5'
23408 5' -59.3 NC_005259.1 + 66182 0.67 0.475858
Target:  5'- aUCGGCAcCGCUGCCGGugcaguacGGGucaGGCGc -3'
miRNA:   3'- aAGCCGUuGUGGCGGCU--------CCCug-UCGU- -5'
23408 5' -59.3 NC_005259.1 + 28943 0.67 0.475858
Target:  5'- -gCGGCAcgauccugcgccGCAUCGCCGAGGu-CGGUg -3'
miRNA:   3'- aaGCCGU------------UGUGGCGGCUCCcuGUCGu -5'
23408 5' -59.3 NC_005259.1 + 66917 0.67 0.475858
Target:  5'- -cCGGCAGCGCgcggugcuCGaCCG-GGGugAGCGg -3'
miRNA:   3'- aaGCCGUUGUG--------GC-GGCuCCCugUCGU- -5'
23408 5' -59.3 NC_005259.1 + 61610 0.67 0.469967
Target:  5'- gUCGGCGgggaacagcagaccgGCACCGCCGAcGGuGAacucaccgguCAGCu -3'
miRNA:   3'- aAGCCGU---------------UGUGGCGGCU-CC-CU----------GUCGu -5'
23408 5' -59.3 NC_005259.1 + 2115 0.67 0.45637
Target:  5'- aUUGGCAcACGCuCGCCGAGGu-CAcGCAg -3'
miRNA:   3'- aAGCCGU-UGUG-GCGGCUCCcuGU-CGU- -5'
23408 5' -59.3 NC_005259.1 + 43952 0.67 0.446788
Target:  5'- gUCGGCGAugggcggggcCGCCGCCugaccGAGGG-CGGUg -3'
miRNA:   3'- aAGCCGUU----------GUGGCGG-----CUCCCuGUCGu -5'
23408 5' -59.3 NC_005259.1 + 64446 0.67 0.446788
Target:  5'- -cCGG-GGCGCUGCCcuuGGGGCGGCGa -3'
miRNA:   3'- aaGCCgUUGUGGCGGcu-CCCUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 36449 0.67 0.446788
Target:  5'- --aGGuCGAC-CgCGUCGAGGGugAGCAc -3'
miRNA:   3'- aagCC-GUUGuG-GCGGCUCCCugUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.