miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23408 5' -59.3 NC_005259.1 + 47283 0.67 0.437319
Target:  5'- -cCGaGCAGacCGCCGUCGccGGACAGCGa -3'
miRNA:   3'- aaGC-CGUU--GUGGCGGCucCCUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 46060 0.67 0.436378
Target:  5'- -aUGGCcuugagcugcucaAGCACCGCCGGGGcGAgCGGUg -3'
miRNA:   3'- aaGCCG-------------UUGUGGCGGCUCC-CU-GUCGu -5'
23408 5' -59.3 NC_005259.1 + 61610 0.67 0.469967
Target:  5'- gUCGGCGgggaacagcagaccgGCACCGCCGAcGGuGAacucaccgguCAGCu -3'
miRNA:   3'- aAGCCGU---------------UGUGGCGGCU-CC-CU----------GUCGu -5'
23408 5' -59.3 NC_005259.1 + 48962 0.68 0.409621
Target:  5'- aUCGGCAACGcCCGCauGGGucguGACGGCu -3'
miRNA:   3'- aAGCCGUUGU-GGCGgcUCC----CUGUCGu -5'
23408 5' -59.3 NC_005259.1 + 47074 0.68 0.400634
Target:  5'- --aGGCgAGCGCCGagaCGAuGGGCAGCAc -3'
miRNA:   3'- aagCCG-UUGUGGCg--GCUcCCUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 55028 0.68 0.427037
Target:  5'- cUCGGCAcGgGCUGCCGAGGugcuugccucgguGGCAGUc -3'
miRNA:   3'- aAGCCGU-UgUGGCGGCUCC-------------CUGUCGu -5'
23408 5' -59.3 NC_005259.1 + 26939 0.68 0.390895
Target:  5'- cUCGGCAuACGCCGCUGcuGGaacgugcGCAGCGc -3'
miRNA:   3'- aAGCCGU-UGUGGCGGCucCC-------UGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 49435 0.68 0.391774
Target:  5'- -cCGGCgAGCGCCGCCuuGGucGGCAGCc -3'
miRNA:   3'- aaGCCG-UUGUGGCGGcuCC--CUGUCGu -5'
23408 5' -59.3 NC_005259.1 + 3118 0.68 0.391774
Target:  5'- aUUGcGCGGCACCGUgGgcAGcGGACGGCAc -3'
miRNA:   3'- aAGC-CGUUGUGGCGgC--UC-CCUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 42038 0.68 0.409621
Target:  5'- gUCGGguCGACugCGCUGuccucGGGGugGGCGg -3'
miRNA:   3'- aAGCC--GUUGugGCGGC-----UCCCugUCGU- -5'
23408 5' -59.3 NC_005259.1 + 44985 0.68 0.418732
Target:  5'- -cCGGUgcgacugccgaGGCACCGCCGAccgccGGGGCcGCGc -3'
miRNA:   3'- aaGCCG-----------UUGUGGCGGCU-----CCCUGuCGU- -5'
23408 5' -59.3 NC_005259.1 + 35996 0.68 0.427037
Target:  5'- -aCGGCGAgGCCGgacugcaCCGAGGuGGcCAGCGa -3'
miRNA:   3'- aaGCCGUUgUGGC-------GGCUCC-CU-GUCGU- -5'
23408 5' -59.3 NC_005259.1 + 17340 0.68 0.427966
Target:  5'- -cCGGuCAACgucGCCGUCGAGGucGGCGGCu -3'
miRNA:   3'- aaGCC-GUUG---UGGCGGCUCC--CUGUCGu -5'
23408 5' -59.3 NC_005259.1 + 43735 0.68 0.427966
Target:  5'- -gCGGCcAUGCCGCCGAGccGGGCAaCAu -3'
miRNA:   3'- aaGCCGuUGUGGCGGCUC--CCUGUcGU- -5'
23408 5' -59.3 NC_005259.1 + 52142 0.69 0.341365
Target:  5'- -cCGGC-ACcUCGCCGAGGcaGGCAGCGc -3'
miRNA:   3'- aaGCCGuUGuGGCGGCUCC--CUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 13009 0.69 0.349432
Target:  5'- cUCGGCuACGCCGCCGcccGGcccCAGCAc -3'
miRNA:   3'- aAGCCGuUGUGGCGGCu--CCcu-GUCGU- -5'
23408 5' -59.3 NC_005259.1 + 64007 0.69 0.341365
Target:  5'- -aCGGCAuacCACCGCgccCGAGGcGCGGCGa -3'
miRNA:   3'- aaGCCGUu--GUGGCG---GCUCCcUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 34544 0.69 0.333433
Target:  5'- --aGGCAGCcucagcuuGCCGUCGGGGccGACGGCGa -3'
miRNA:   3'- aagCCGUUG--------UGGCGGCUCC--CUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 45613 0.7 0.310453
Target:  5'- cUCGGUcucGAUGcCCGCCGGGccGGGCAGCGc -3'
miRNA:   3'- aAGCCG---UUGU-GGCGGCUC--CCUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 27071 0.7 0.310453
Target:  5'- -aCGGCGACAUCGCCGAcauucuGcGGCGGCu -3'
miRNA:   3'- aaGCCGUUGUGGCGGCU------CcCUGUCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.