miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23408 5' -59.3 NC_005259.1 + 47074 0.68 0.400634
Target:  5'- --aGGCgAGCGCCGagaCGAuGGGCAGCAc -3'
miRNA:   3'- aagCCG-UUGUGGCg--GCUcCCUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 42038 0.68 0.409621
Target:  5'- gUCGGguCGACugCGCUGuccucGGGGugGGCGg -3'
miRNA:   3'- aAGCC--GUUGugGCGGC-----UCCCugUCGU- -5'
23408 5' -59.3 NC_005259.1 + 48962 0.68 0.409621
Target:  5'- aUCGGCAACGcCCGCauGGGucguGACGGCu -3'
miRNA:   3'- aAGCCGUUGU-GGCGgcUCC----CUGUCGu -5'
23408 5' -59.3 NC_005259.1 + 44985 0.68 0.418732
Target:  5'- -cCGGUgcgacugccgaGGCACCGCCGAccgccGGGGCcGCGc -3'
miRNA:   3'- aaGCCG-----------UUGUGGCGGCU-----CCCUGuCGU- -5'
23408 5' -59.3 NC_005259.1 + 35996 0.68 0.427037
Target:  5'- -aCGGCGAgGCCGgacugcaCCGAGGuGGcCAGCGa -3'
miRNA:   3'- aaGCCGUUgUGGC-------GGCUCC-CU-GUCGU- -5'
23408 5' -59.3 NC_005259.1 + 55028 0.68 0.427037
Target:  5'- cUCGGCAcGgGCUGCCGAGGugcuugccucgguGGCAGUc -3'
miRNA:   3'- aAGCCGU-UgUGGCGGCUCC-------------CUGUCGu -5'
23408 5' -59.3 NC_005259.1 + 43735 0.68 0.427966
Target:  5'- -gCGGCcAUGCCGCCGAGccGGGCAaCAu -3'
miRNA:   3'- aaGCCGuUGUGGCGGCUC--CCUGUcGU- -5'
23408 5' -59.3 NC_005259.1 + 17340 0.68 0.427966
Target:  5'- -cCGGuCAACgucGCCGUCGAGGucGGCGGCu -3'
miRNA:   3'- aaGCC-GUUG---UGGCGGCUCC--CUGUCGu -5'
23408 5' -59.3 NC_005259.1 + 46060 0.67 0.436378
Target:  5'- -aUGGCcuugagcugcucaAGCACCGCCGGGGcGAgCGGUg -3'
miRNA:   3'- aaGCCG-------------UUGUGGCGGCUCC-CU-GUCGu -5'
23408 5' -59.3 NC_005259.1 + 23636 0.67 0.437319
Target:  5'- cUCGGUgugguuucGGC-CCGCCGAcGGcGACGGCu -3'
miRNA:   3'- aAGCCG--------UUGuGGCGGCU-CC-CUGUCGu -5'
23408 5' -59.3 NC_005259.1 + 47283 0.67 0.437319
Target:  5'- -cCGaGCAGacCGCCGUCGccGGACAGCGa -3'
miRNA:   3'- aaGC-CGUU--GUGGCGGCucCCUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 64446 0.67 0.446788
Target:  5'- -cCGG-GGCGCUGCCcuuGGGGCGGCGa -3'
miRNA:   3'- aaGCCgUUGUGGCGGcu-CCCUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 43952 0.67 0.446788
Target:  5'- gUCGGCGAugggcggggcCGCCGCCugaccGAGGG-CGGUg -3'
miRNA:   3'- aAGCCGUU----------GUGGCGG-----CUCCCuGUCGu -5'
23408 5' -59.3 NC_005259.1 + 36449 0.67 0.446788
Target:  5'- --aGGuCGAC-CgCGUCGAGGGugAGCAc -3'
miRNA:   3'- aagCC-GUUGuG-GCGGCUCCCugUCGU- -5'
23408 5' -59.3 NC_005259.1 + 2115 0.67 0.45637
Target:  5'- aUUGGCAcACGCuCGCCGAGGu-CAcGCAg -3'
miRNA:   3'- aAGCCGU-UGUG-GCGGCUCCcuGU-CGU- -5'
23408 5' -59.3 NC_005259.1 + 61610 0.67 0.469967
Target:  5'- gUCGGCGgggaacagcagaccgGCACCGCCGAcGGuGAacucaccgguCAGCu -3'
miRNA:   3'- aAGCCGU---------------UGUGGCGGCU-CC-CU----------GUCGu -5'
23408 5' -59.3 NC_005259.1 + 28943 0.67 0.475858
Target:  5'- -gCGGCAcgauccugcgccGCAUCGCCGAGGu-CGGUg -3'
miRNA:   3'- aaGCCGU------------UGUGGCGGCUCCcuGUCGu -5'
23408 5' -59.3 NC_005259.1 + 63113 0.67 0.475858
Target:  5'- -aCGGCA--GCCGUCGAGGGugGu-- -3'
miRNA:   3'- aaGCCGUugUGGCGGCUCCCugUcgu -5'
23408 5' -59.3 NC_005259.1 + 66917 0.67 0.475858
Target:  5'- -cCGGCAGCGCgcggugcuCGaCCG-GGGugAGCGg -3'
miRNA:   3'- aaGCCGUUGUG--------GC-GGCuCCCugUCGU- -5'
23408 5' -59.3 NC_005259.1 + 66182 0.67 0.475858
Target:  5'- aUCGGCAcCGCUGCCGGugcaguacGGGucaGGCGc -3'
miRNA:   3'- aAGCCGUuGUGGCGGCU--------CCCug-UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.