Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23408 | 5' | -59.3 | NC_005259.1 | + | 20652 | 0.7 | 0.288699 |
Target: 5'- gUUCGGCGGCACCgggGCCGA-GGACGcCAu -3' miRNA: 3'- -AAGCCGUUGUGG---CGGCUcCCUGUcGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 46576 | 0.71 | 0.26816 |
Target: 5'- -gCGGCGucgaccGCGCCGcCCGAGGcGAgCAGCGc -3' miRNA: 3'- aaGCCGU------UGUGGC-GGCUCC-CU-GUCGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 59145 | 0.72 | 0.224837 |
Target: 5'- cUCGGCAGCGgUGCCGGGGaGCuGCu -3' miRNA: 3'- aAGCCGUUGUgGCGGCUCCcUGuCGu -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 16643 | 0.73 | 0.202848 |
Target: 5'- -aCGGCGACGCCGCCGAcaauuucgGGGugAccGCc -3' miRNA: 3'- aaGCCGUUGUGGCGGCU--------CCCugU--CGu -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 26134 | 0.74 | 0.164433 |
Target: 5'- -cCGGUccGACGCCGCCGAGGccgaGCAGCc -3' miRNA: 3'- aaGCCG--UUGUGGCGGCUCCc---UGUCGu -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 43024 | 0.74 | 0.163997 |
Target: 5'- -cCGGCGAUGCCGCCGAGcaGGccgccgaGCAGCGa -3' miRNA: 3'- aaGCCGUUGUGGCGGCUC--CC-------UGUCGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 26415 | 0.74 | 0.161832 |
Target: 5'- -gCGGCGgugccgccguagaacGCACCGCCGAGcGGGCGGg- -3' miRNA: 3'- aaGCCGU---------------UGUGGCGGCUC-CCUGUCgu -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 22988 | 0.74 | 0.160118 |
Target: 5'- -cCGGUgucGACGCCGCCGAGgucaccgaGGACGGCu -3' miRNA: 3'- aaGCCG---UUGUGGCGGCUC--------CCUGUCGu -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 63174 | 0.74 | 0.160118 |
Target: 5'- ---cGCAGCGCCGCCGAGGuGAUcGCAc -3' miRNA: 3'- aagcCGUUGUGGCGGCUCC-CUGuCGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 47609 | 0.75 | 0.145421 |
Target: 5'- gUCGGCGAgGCugagguucuugucguCGCCGAGGG-CAGCGa -3' miRNA: 3'- aAGCCGUUgUG---------------GCGGCUCCCuGUCGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 51477 | 0.77 | 0.103775 |
Target: 5'- cUCGGCGacccACACCGCCG-GGGAUAGg- -3' miRNA: 3'- aAGCCGU----UGUGGCGGCuCCCUGUCgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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