miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23408 5' -59.3 NC_005259.1 + 2115 0.67 0.45637
Target:  5'- aUUGGCAcACGCuCGCCGAGGu-CAcGCAg -3'
miRNA:   3'- aAGCCGU-UGUG-GCGGCUCCcuGU-CGU- -5'
23408 5' -59.3 NC_005259.1 + 3118 0.68 0.391774
Target:  5'- aUUGcGCGGCACCGUgGgcAGcGGACGGCAc -3'
miRNA:   3'- aAGC-CGUUGUGGCGgC--UC-CCUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 13009 0.69 0.349432
Target:  5'- cUCGGCuACGCCGCCGcccGGcccCAGCAc -3'
miRNA:   3'- aAGCCGuUGUGGCGGCu--CCcu-GUCGU- -5'
23408 5' -59.3 NC_005259.1 + 16643 0.73 0.202848
Target:  5'- -aCGGCGACGCCGCCGAcaauuucgGGGugAccGCc -3'
miRNA:   3'- aaGCCGUUGUGGCGGCU--------CCCugU--CGu -5'
23408 5' -59.3 NC_005259.1 + 17340 0.68 0.427966
Target:  5'- -cCGGuCAACgucGCCGUCGAGGucGGCGGCu -3'
miRNA:   3'- aaGCC-GUUG---UGGCGGCUCC--CUGUCGu -5'
23408 5' -59.3 NC_005259.1 + 18357 0.66 0.50584
Target:  5'- -aCGGCGACAUguggcacaUGcCCGAGGG-CGGUAg -3'
miRNA:   3'- aaGCCGUUGUG--------GC-GGCUCCCuGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 20652 0.7 0.288699
Target:  5'- gUUCGGCGGCACCgggGCCGA-GGACGcCAu -3'
miRNA:   3'- -AAGCCGUUGUGG---CGGCUcCCUGUcGU- -5'
23408 5' -59.3 NC_005259.1 + 22988 0.74 0.160118
Target:  5'- -cCGGUgucGACGCCGCCGAGgucaccgaGGACGGCu -3'
miRNA:   3'- aaGCCG---UUGUGGCGGCUC--------CCUGUCGu -5'
23408 5' -59.3 NC_005259.1 + 23636 0.67 0.437319
Target:  5'- cUCGGUgugguuucGGC-CCGCCGAcGGcGACGGCu -3'
miRNA:   3'- aAGCCG--------UUGuGGCGGCU-CC-CUGUCGu -5'
23408 5' -59.3 NC_005259.1 + 26134 0.74 0.164433
Target:  5'- -cCGGUccGACGCCGCCGAGGccgaGCAGCc -3'
miRNA:   3'- aaGCCG--UUGUGGCGGCUCCc---UGUCGu -5'
23408 5' -59.3 NC_005259.1 + 26415 0.74 0.161832
Target:  5'- -gCGGCGgugccgccguagaacGCACCGCCGAGcGGGCGGg- -3'
miRNA:   3'- aaGCCGU---------------UGUGGCGGCUC-CCUGUCgu -5'
23408 5' -59.3 NC_005259.1 + 26939 0.68 0.390895
Target:  5'- cUCGGCAuACGCCGCUGcuGGaacgugcGCAGCGc -3'
miRNA:   3'- aAGCCGU-UGUGGCGGCucCC-------UGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 27071 0.7 0.310453
Target:  5'- -aCGGCGACAUCGCCGAcauucuGcGGCGGCu -3'
miRNA:   3'- aaGCCGUUGUGGCGGCU------CcCUGUCGu -5'
23408 5' -59.3 NC_005259.1 + 27522 0.66 0.52627
Target:  5'- gUCcGCAcACGCCGUCGAGGccccACGGCGg -3'
miRNA:   3'- aAGcCGU-UGUGGCGGCUCCc---UGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 28943 0.67 0.475858
Target:  5'- -gCGGCAcgauccugcgccGCAUCGCCGAGGu-CGGUg -3'
miRNA:   3'- aaGCCGU------------UGUGGCGGCUCCcuGUCGu -5'
23408 5' -59.3 NC_005259.1 + 31188 0.66 0.495752
Target:  5'- gUCGGCGaggAUGCCGCCGAagaucGGGAU-GCc -3'
miRNA:   3'- aAGCCGU---UGUGGCGGCU-----CCCUGuCGu -5'
23408 5' -59.3 NC_005259.1 + 34544 0.69 0.333433
Target:  5'- --aGGCAGCcucagcuuGCCGUCGGGGccGACGGCGa -3'
miRNA:   3'- aagCCGUUG--------UGGCGGCUCC--CUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 35876 0.66 0.536601
Target:  5'- -aCcGCAGcCGCCGCCGAGGcagaccACGGCGa -3'
miRNA:   3'- aaGcCGUU-GUGGCGGCUCCc-----UGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 35996 0.68 0.427037
Target:  5'- -aCGGCGAgGCCGgacugcaCCGAGGuGGcCAGCGa -3'
miRNA:   3'- aaGCCGUUgUGGC-------GGCUCC-CU-GUCGU- -5'
23408 5' -59.3 NC_005259.1 + 36257 0.66 0.536601
Target:  5'- gUCGGCAGCGCCacGCCGGacaGAUugAGCAg -3'
miRNA:   3'- aAGCCGUUGUGG--CGGCUcc-CUG--UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.