Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23408 | 5' | -59.3 | NC_005259.1 | + | 36449 | 0.67 | 0.446788 |
Target: 5'- --aGGuCGAC-CgCGUCGAGGGugAGCAc -3' miRNA: 3'- aagCC-GUUGuG-GCGGCUCCCugUCGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 42038 | 0.68 | 0.409621 |
Target: 5'- gUCGGguCGACugCGCUGuccucGGGGugGGCGg -3' miRNA: 3'- aAGCC--GUUGugGCGGC-----UCCCugUCGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 43024 | 0.74 | 0.163997 |
Target: 5'- -cCGGCGAUGCCGCCGAGcaGGccgccgaGCAGCGa -3' miRNA: 3'- aaGCCGUUGUGGCGGCUC--CC-------UGUCGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 43735 | 0.68 | 0.427966 |
Target: 5'- -gCGGCcAUGCCGCCGAGccGGGCAaCAu -3' miRNA: 3'- aaGCCGuUGUGGCGGCUC--CCUGUcGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 43879 | 0.66 | 0.540754 |
Target: 5'- -cCGGCAGCguuGCCGCCGAcauugcccGcgccggcugaucgauGGGCAGCGa -3' miRNA: 3'- aaGCCGUUG---UGGCGGCU--------C---------------CCUGUCGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 43952 | 0.67 | 0.446788 |
Target: 5'- gUCGGCGAugggcggggcCGCCGCCugaccGAGGG-CGGUg -3' miRNA: 3'- aAGCCGUU----------GUGGCGG-----CUCCCuGUCGu -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 44985 | 0.68 | 0.418732 |
Target: 5'- -cCGGUgcgacugccgaGGCACCGCCGAccgccGGGGCcGCGc -3' miRNA: 3'- aaGCCG-----------UUGUGGCGGCU-----CCCUGuCGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 45613 | 0.7 | 0.310453 |
Target: 5'- cUCGGUcucGAUGcCCGCCGGGccGGGCAGCGc -3' miRNA: 3'- aAGCCG---UUGU-GGCGGCUC--CCUGUCGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 45743 | 0.66 | 0.50584 |
Target: 5'- --aGGCcgcGCACCGCCucGGGGAUgAGCAc -3' miRNA: 3'- aagCCGu--UGUGGCGGc-UCCCUG-UCGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 46060 | 0.67 | 0.436378 |
Target: 5'- -aUGGCcuugagcugcucaAGCACCGCCGGGGcGAgCGGUg -3' miRNA: 3'- aaGCCG-------------UUGUGGCGGCUCC-CU-GUCGu -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 46576 | 0.71 | 0.26816 |
Target: 5'- -gCGGCGucgaccGCGCCGcCCGAGGcGAgCAGCGc -3' miRNA: 3'- aaGCCGU------UGUGGC-GGCUCC-CU-GUCGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 47074 | 0.68 | 0.400634 |
Target: 5'- --aGGCgAGCGCCGagaCGAuGGGCAGCAc -3' miRNA: 3'- aagCCG-UUGUGGCg--GCUcCCUGUCGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 47283 | 0.67 | 0.437319 |
Target: 5'- -cCGaGCAGacCGCCGUCGccGGACAGCGa -3' miRNA: 3'- aaGC-CGUU--GUGGCGGCucCCUGUCGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 47609 | 0.75 | 0.145421 |
Target: 5'- gUCGGCGAgGCugagguucuugucguCGCCGAGGG-CAGCGa -3' miRNA: 3'- aAGCCGUUgUG---------------GCGGCUCCCuGUCGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 48962 | 0.68 | 0.409621 |
Target: 5'- aUCGGCAACGcCCGCauGGGucguGACGGCu -3' miRNA: 3'- aAGCCGUUGU-GGCGgcUCC----CUGUCGu -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 49435 | 0.68 | 0.391774 |
Target: 5'- -cCGGCgAGCGCCGCCuuGGucGGCAGCc -3' miRNA: 3'- aaGCCG-UUGUGGCGGcuCC--CUGUCGu -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 51401 | 0.66 | 0.516014 |
Target: 5'- -aCGuGUucACAUCGCCGAGGGGcCGGUu -3' miRNA: 3'- aaGC-CGu-UGUGGCGGCUCCCU-GUCGu -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 51477 | 0.77 | 0.103775 |
Target: 5'- cUCGGCGacccACACCGCCG-GGGAUAGg- -3' miRNA: 3'- aAGCCGU----UGUGGCGGCuCCCUGUCgu -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 52142 | 0.69 | 0.341365 |
Target: 5'- -cCGGC-ACcUCGCCGAGGcaGGCAGCGc -3' miRNA: 3'- aaGCCGuUGuGGCGGCUCC--CUGUCGU- -5' |
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23408 | 5' | -59.3 | NC_005259.1 | + | 55028 | 0.68 | 0.427037 |
Target: 5'- cUCGGCAcGgGCUGCCGAGGugcuugccucgguGGCAGUc -3' miRNA: 3'- aAGCCGU-UgUGGCGGCUCC-------------CUGUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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