miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23408 5' -59.3 NC_005259.1 + 56219 0.66 0.533494
Target:  5'- aUCGGUGuaugccagucguCGCCGCCGAccacguuGGGAuCGGCGg -3'
miRNA:   3'- aAGCCGUu-----------GUGGCGGCU-------CCCU-GUCGU- -5'
23408 5' -59.3 NC_005259.1 + 58697 0.66 0.533494
Target:  5'- gUCGGCucguCGCCGCCGccgucaccaucgccGGGGGugucguuggcacCGGCAc -3'
miRNA:   3'- aAGCCGuu--GUGGCGGC--------------UCCCU------------GUCGU- -5'
23408 5' -59.3 NC_005259.1 + 59145 0.72 0.224837
Target:  5'- cUCGGCAGCGgUGCCGGGGaGCuGCu -3'
miRNA:   3'- aAGCCGUUGUgGCGGCUCCcUGuCGu -5'
23408 5' -59.3 NC_005259.1 + 61610 0.67 0.469967
Target:  5'- gUCGGCGgggaacagcagaccgGCACCGCCGAcGGuGAacucaccgguCAGCu -3'
miRNA:   3'- aAGCCGU---------------UGUGGCGGCU-CC-CU----------GUCGu -5'
23408 5' -59.3 NC_005259.1 + 63113 0.67 0.475858
Target:  5'- -aCGGCA--GCCGUCGAGGGugGu-- -3'
miRNA:   3'- aaGCCGUugUGGCGGCUCCCugUcgu -5'
23408 5' -59.3 NC_005259.1 + 63174 0.74 0.160118
Target:  5'- ---cGCAGCGCCGCCGAGGuGAUcGCAc -3'
miRNA:   3'- aagcCGUUGUGGCGGCUCC-CUGuCGU- -5'
23408 5' -59.3 NC_005259.1 + 64007 0.69 0.341365
Target:  5'- -aCGGCAuacCACCGCgccCGAGGcGCGGCGa -3'
miRNA:   3'- aaGCCGUu--GUGGCG---GCUCCcUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 64446 0.67 0.446788
Target:  5'- -cCGG-GGCGCUGCCcuuGGGGCGGCGa -3'
miRNA:   3'- aaGCCgUUGUGGCGGcu-CCCUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 66051 0.66 0.495752
Target:  5'- -aCGuaGACGCCGCCGuGGGcCuGCu -3'
miRNA:   3'- aaGCcgUUGUGGCGGCuCCCuGuCGu -5'
23408 5' -59.3 NC_005259.1 + 66182 0.67 0.475858
Target:  5'- aUCGGCAcCGCUGCCGGugcaguacGGGucaGGCGc -3'
miRNA:   3'- aAGCCGUuGUGGCGGCU--------CCCug-UCGU- -5'
23408 5' -59.3 NC_005259.1 + 66917 0.67 0.475858
Target:  5'- -cCGGCAGCGCgcggugcuCGaCCG-GGGugAGCGg -3'
miRNA:   3'- aaGCCGUUGUG--------GC-GGCuCCCugUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.