miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23408 5' -59.3 NC_005259.1 + 46576 0.71 0.26816
Target:  5'- -gCGGCGucgaccGCGCCGcCCGAGGcGAgCAGCGc -3'
miRNA:   3'- aaGCCGU------UGUGGC-GGCUCC-CU-GUCGU- -5'
23408 5' -59.3 NC_005259.1 + 46060 0.67 0.436378
Target:  5'- -aUGGCcuugagcugcucaAGCACCGCCGGGGcGAgCGGUg -3'
miRNA:   3'- aaGCCG-------------UUGUGGCGGCUCC-CU-GUCGu -5'
23408 5' -59.3 NC_005259.1 + 45743 0.66 0.50584
Target:  5'- --aGGCcgcGCACCGCCucGGGGAUgAGCAc -3'
miRNA:   3'- aagCCGu--UGUGGCGGc-UCCCUG-UCGU- -5'
23408 5' -59.3 NC_005259.1 + 45613 0.7 0.310453
Target:  5'- cUCGGUcucGAUGcCCGCCGGGccGGGCAGCGc -3'
miRNA:   3'- aAGCCG---UUGU-GGCGGCUC--CCUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 44985 0.68 0.418732
Target:  5'- -cCGGUgcgacugccgaGGCACCGCCGAccgccGGGGCcGCGc -3'
miRNA:   3'- aaGCCG-----------UUGUGGCGGCU-----CCCUGuCGU- -5'
23408 5' -59.3 NC_005259.1 + 43952 0.67 0.446788
Target:  5'- gUCGGCGAugggcggggcCGCCGCCugaccGAGGG-CGGUg -3'
miRNA:   3'- aAGCCGUU----------GUGGCGG-----CUCCCuGUCGu -5'
23408 5' -59.3 NC_005259.1 + 43879 0.66 0.540754
Target:  5'- -cCGGCAGCguuGCCGCCGAcauugcccGcgccggcugaucgauGGGCAGCGa -3'
miRNA:   3'- aaGCCGUUG---UGGCGGCU--------C---------------CCUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 43735 0.68 0.427966
Target:  5'- -gCGGCcAUGCCGCCGAGccGGGCAaCAu -3'
miRNA:   3'- aaGCCGuUGUGGCGGCUC--CCUGUcGU- -5'
23408 5' -59.3 NC_005259.1 + 43024 0.74 0.163997
Target:  5'- -cCGGCGAUGCCGCCGAGcaGGccgccgaGCAGCGa -3'
miRNA:   3'- aaGCCGUUGUGGCGGCUC--CC-------UGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 42038 0.68 0.409621
Target:  5'- gUCGGguCGACugCGCUGuccucGGGGugGGCGg -3'
miRNA:   3'- aAGCC--GUUGugGCGGC-----UCCCugUCGU- -5'
23408 5' -59.3 NC_005259.1 + 36449 0.67 0.446788
Target:  5'- --aGGuCGAC-CgCGUCGAGGGugAGCAc -3'
miRNA:   3'- aagCC-GUUGuG-GCGGCUCCCugUCGU- -5'
23408 5' -59.3 NC_005259.1 + 36257 0.66 0.536601
Target:  5'- gUCGGCAGCGCCacGCCGGacaGAUugAGCAg -3'
miRNA:   3'- aAGCCGUUGUGG--CGGCUcc-CUG--UCGU- -5'
23408 5' -59.3 NC_005259.1 + 35996 0.68 0.427037
Target:  5'- -aCGGCGAgGCCGgacugcaCCGAGGuGGcCAGCGa -3'
miRNA:   3'- aaGCCGUUgUGGC-------GGCUCC-CU-GUCGU- -5'
23408 5' -59.3 NC_005259.1 + 35876 0.66 0.536601
Target:  5'- -aCcGCAGcCGCCGCCGAGGcagaccACGGCGa -3'
miRNA:   3'- aaGcCGUU-GUGGCGGCUCCc-----UGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 34544 0.69 0.333433
Target:  5'- --aGGCAGCcucagcuuGCCGUCGGGGccGACGGCGa -3'
miRNA:   3'- aagCCGUUG--------UGGCGGCUCC--CUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 31188 0.66 0.495752
Target:  5'- gUCGGCGaggAUGCCGCCGAagaucGGGAU-GCc -3'
miRNA:   3'- aAGCCGU---UGUGGCGGCU-----CCCUGuCGu -5'
23408 5' -59.3 NC_005259.1 + 28943 0.67 0.475858
Target:  5'- -gCGGCAcgauccugcgccGCAUCGCCGAGGu-CGGUg -3'
miRNA:   3'- aaGCCGU------------UGUGGCGGCUCCcuGUCGu -5'
23408 5' -59.3 NC_005259.1 + 27522 0.66 0.52627
Target:  5'- gUCcGCAcACGCCGUCGAGGccccACGGCGg -3'
miRNA:   3'- aAGcCGU-UGUGGCGGCUCCc---UGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 27071 0.7 0.310453
Target:  5'- -aCGGCGACAUCGCCGAcauucuGcGGCGGCu -3'
miRNA:   3'- aaGCCGUUGUGGCGGCU------CcCUGUCGu -5'
23408 5' -59.3 NC_005259.1 + 26939 0.68 0.390895
Target:  5'- cUCGGCAuACGCCGCUGcuGGaacgugcGCAGCGc -3'
miRNA:   3'- aAGCCGU-UGUGGCGGCucCC-------UGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.