miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23408 5' -59.3 NC_005259.1 + 47074 0.68 0.400634
Target:  5'- --aGGCgAGCGCCGagaCGAuGGGCAGCAc -3'
miRNA:   3'- aagCCG-UUGUGGCg--GCUcCCUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 3118 0.68 0.391774
Target:  5'- aUUGcGCGGCACCGUgGgcAGcGGACGGCAc -3'
miRNA:   3'- aAGC-CGUUGUGGCGgC--UC-CCUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 59145 0.72 0.224837
Target:  5'- cUCGGCAGCGgUGCCGGGGaGCuGCu -3'
miRNA:   3'- aAGCCGUUGUgGCGGCUCCcUGuCGu -5'
23408 5' -59.3 NC_005259.1 + 16643 0.73 0.202848
Target:  5'- -aCGGCGACGCCGCCGAcaauuucgGGGugAccGCc -3'
miRNA:   3'- aaGCCGUUGUGGCGGCU--------CCCugU--CGu -5'
23408 5' -59.3 NC_005259.1 + 26134 0.74 0.164433
Target:  5'- -cCGGUccGACGCCGCCGAGGccgaGCAGCc -3'
miRNA:   3'- aaGCCG--UUGUGGCGGCUCCc---UGUCGu -5'
23408 5' -59.3 NC_005259.1 + 43024 0.74 0.163997
Target:  5'- -cCGGCGAUGCCGCCGAGcaGGccgccgaGCAGCGa -3'
miRNA:   3'- aaGCCGUUGUGGCGGCUC--CC-------UGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 26415 0.74 0.161832
Target:  5'- -gCGGCGgugccgccguagaacGCACCGCCGAGcGGGCGGg- -3'
miRNA:   3'- aaGCCGU---------------UGUGGCGGCUC-CCUGUCgu -5'
23408 5' -59.3 NC_005259.1 + 22988 0.74 0.160118
Target:  5'- -cCGGUgucGACGCCGCCGAGgucaccgaGGACGGCu -3'
miRNA:   3'- aaGCCG---UUGUGGCGGCUC--------CCUGUCGu -5'
23408 5' -59.3 NC_005259.1 + 63174 0.74 0.160118
Target:  5'- ---cGCAGCGCCGCCGAGGuGAUcGCAc -3'
miRNA:   3'- aagcCGUUGUGGCGGCUCC-CUGuCGU- -5'
23408 5' -59.3 NC_005259.1 + 47609 0.75 0.145421
Target:  5'- gUCGGCGAgGCugagguucuugucguCGCCGAGGG-CAGCGa -3'
miRNA:   3'- aAGCCGUUgUG---------------GCGGCUCCCuGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 46576 0.71 0.26816
Target:  5'- -gCGGCGucgaccGCGCCGcCCGAGGcGAgCAGCGc -3'
miRNA:   3'- aaGCCGU------UGUGGC-GGCUCC-CU-GUCGU- -5'
23408 5' -59.3 NC_005259.1 + 20652 0.7 0.288699
Target:  5'- gUUCGGCGGCACCgggGCCGA-GGACGcCAu -3'
miRNA:   3'- -AAGCCGUUGUGG---CGGCUcCCUGUcGU- -5'
23408 5' -59.3 NC_005259.1 + 49435 0.68 0.391774
Target:  5'- -cCGGCgAGCGCCGCCuuGGucGGCAGCc -3'
miRNA:   3'- aaGCCG-UUGUGGCGGcuCC--CUGUCGu -5'
23408 5' -59.3 NC_005259.1 + 26939 0.68 0.390895
Target:  5'- cUCGGCAuACGCCGCUGcuGGaacgugcGCAGCGc -3'
miRNA:   3'- aAGCCGU-UGUGGCGGCucCC-------UGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 13009 0.69 0.349432
Target:  5'- cUCGGCuACGCCGCCGcccGGcccCAGCAc -3'
miRNA:   3'- aAGCCGuUGUGGCGGCu--CCcu-GUCGU- -5'
23408 5' -59.3 NC_005259.1 + 52142 0.69 0.341365
Target:  5'- -cCGGC-ACcUCGCCGAGGcaGGCAGCGc -3'
miRNA:   3'- aaGCCGuUGuGGCGGCUCC--CUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 64007 0.69 0.341365
Target:  5'- -aCGGCAuacCACCGCgccCGAGGcGCGGCGa -3'
miRNA:   3'- aaGCCGUu--GUGGCG---GCUCCcUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 34544 0.69 0.333433
Target:  5'- --aGGCAGCcucagcuuGCCGUCGGGGccGACGGCGa -3'
miRNA:   3'- aagCCGUUG--------UGGCGGCUCC--CUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 45613 0.7 0.310453
Target:  5'- cUCGGUcucGAUGcCCGCCGGGccGGGCAGCGc -3'
miRNA:   3'- aAGCCG---UUGU-GGCGGCUC--CCUGUCGU- -5'
23408 5' -59.3 NC_005259.1 + 27071 0.7 0.310453
Target:  5'- -aCGGCGACAUCGCCGAcauucuGcGGCGGCu -3'
miRNA:   3'- aaGCCGUUGUGGCGGCU------CcCUGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.