miRNA display CGI


Results 1 - 20 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 11061 0.66 0.527352
Target:  5'- uGCCGAuCGGCucagcguggaaGCCGUacggcuCGACCU-CGCa -3'
miRNA:   3'- gCGGCU-GCCG-----------UGGCG------GCUGGAaGCGg -5'
23409 5' -61.3 NC_005259.1 + 43023 0.66 0.527352
Target:  5'- -aCCGGCGauGCCGCCGAgCaggcCGCCg -3'
miRNA:   3'- gcGGCUGCcgUGGCGGCUgGaa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 35553 0.66 0.527352
Target:  5'- cCGcCCGAUGaCuuGCCGCCGACC---GCCg -3'
miRNA:   3'- -GC-GGCUGCcG--UGGCGGCUGGaagCGG- -5'
23409 5' -61.3 NC_005259.1 + 23529 0.66 0.527352
Target:  5'- -cUCGACGGUgaaaaucaGCCGCCG-CCU-CGaCCg -3'
miRNA:   3'- gcGGCUGCCG--------UGGCGGCuGGAaGC-GG- -5'
23409 5' -61.3 NC_005259.1 + 8994 0.66 0.527352
Target:  5'- gCGgCGACGGCA--GCCG-CC-UCGUCa -3'
miRNA:   3'- -GCgGCUGCCGUggCGGCuGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 268 0.66 0.527352
Target:  5'- gGCUagGGCGGUguacGCCGCCuacgcGGCCUcgCGCUg -3'
miRNA:   3'- gCGG--CUGCCG----UGGCGG-----CUGGAa-GCGG- -5'
23409 5' -61.3 NC_005259.1 + 4570 0.66 0.527352
Target:  5'- aCGCCGAucguCGGCAcguuCC-CCGACaacacCGCCa -3'
miRNA:   3'- -GCGGCU----GCCGU----GGcGGCUGgaa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 34691 0.66 0.527352
Target:  5'- gCGCUG-CGGaugaUGCCGACCaUCuGCCg -3'
miRNA:   3'- -GCGGCuGCCgug-GCGGCUGGaAG-CGG- -5'
23409 5' -61.3 NC_005259.1 + 66177 0.66 0.527352
Target:  5'- uGCUcauCGGCACCGCUG-CCggUGCa -3'
miRNA:   3'- gCGGcu-GCCGUGGCGGCuGGaaGCGg -5'
23409 5' -61.3 NC_005259.1 + 44332 0.66 0.52439
Target:  5'- gCGCCG-CGuaGCUGCCGGgCUuguuccacggcucgUUGCCg -3'
miRNA:   3'- -GCGGCuGCcgUGGCGGCUgGA--------------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 9531 0.66 0.517502
Target:  5'- cCGCCGcCGGguCACCGgagagcugcCCGGCCU-CGaCCg -3'
miRNA:   3'- -GCGGCuGCC--GUGGC---------GGCUGGAaGC-GG- -5'
23409 5' -61.3 NC_005259.1 + 50395 0.66 0.517502
Target:  5'- uGUCG-CGGC-UCGCCGAgCg-CGCCg -3'
miRNA:   3'- gCGGCuGCCGuGGCGGCUgGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 4522 0.66 0.517502
Target:  5'- gCGCUGcGCGGCACC-CCGGUCgauugUGCCc -3'
miRNA:   3'- -GCGGC-UGCCGUGGcGGCUGGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 28738 0.66 0.517502
Target:  5'- gGCCGAgGGuUACgCGCCcgagcgugaGAUCgUCGCCg -3'
miRNA:   3'- gCGGCUgCC-GUG-GCGG---------CUGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 67743 0.66 0.517502
Target:  5'- -aCCGGCGGCcacuagGCCGCCccGGCCaccgGCCa -3'
miRNA:   3'- gcGGCUGCCG------UGGCGG--CUGGaag-CGG- -5'
23409 5' -61.3 NC_005259.1 + 64420 0.66 0.517502
Target:  5'- aGCCGugaGGgAUCGCCGACgagcUGCCg -3'
miRNA:   3'- gCGGCug-CCgUGGCGGCUGgaa-GCGG- -5'
23409 5' -61.3 NC_005259.1 + 41724 0.66 0.517502
Target:  5'- -aCCGGCGGCggggaggacACCGCCucgacacgcucGACCU-CGCa -3'
miRNA:   3'- gcGGCUGCCG---------UGGCGG-----------CUGGAaGCGg -5'
23409 5' -61.3 NC_005259.1 + 36928 0.66 0.516521
Target:  5'- uGCCGACGGUgaguguuGCUGUC-ACCggggUGCCc -3'
miRNA:   3'- gCGGCUGCCG-------UGGCGGcUGGaa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 24861 0.66 0.516521
Target:  5'- aCGCCGA-GGC-CCGCCucgcucuGACCgcuaucgagUCaGCCg -3'
miRNA:   3'- -GCGGCUgCCGuGGCGG-------CUGGa--------AG-CGG- -5'
23409 5' -61.3 NC_005259.1 + 30126 0.66 0.514561
Target:  5'- uGCCGucCGGCugCGauaccucgggcagcUCGACCgggcCGCCu -3'
miRNA:   3'- gCGGCu-GCCGugGC--------------GGCUGGaa--GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.