miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 37568 0.66 0.488415
Target:  5'- uGUCGACuGC-UCGCCG-CCcgCGCCg -3'
miRNA:   3'- gCGGCUGcCGuGGCGGCuGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 64775 0.66 0.507726
Target:  5'- gCGCCucGGCGGC-CCGCugCGACUggcugugUGCCu -3'
miRNA:   3'- -GCGG--CUGCCGuGGCG--GCUGGaa-----GCGG- -5'
23409 5' -61.3 NC_005259.1 + 61623 0.66 0.488415
Target:  5'- aGCaGAcCGGCACCGCCGACggugaacUCaCCg -3'
miRNA:   3'- gCGgCU-GCCGUGGCGGCUGga-----AGcGG- -5'
23409 5' -61.3 NC_005259.1 + 31768 0.66 0.488415
Target:  5'- cCGCCccgucaucGAUGuGCugCGCCuuGACCgcgUCGUCa -3'
miRNA:   3'- -GCGG--------CUGC-CGugGCGG--CUGGa--AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 45468 0.66 0.498029
Target:  5'- uGCCGAacgGGCcgagcuucugGCCGCUgguGGCCUuggUCGCUg -3'
miRNA:   3'- gCGGCUg--CCG----------UGGCGG---CUGGA---AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 49632 0.66 0.498029
Target:  5'- -aUCGGCGGCAgCCGCgucggcgauggCGGCCUcgauacgCGCCu -3'
miRNA:   3'- gcGGCUGCCGU-GGCG-----------GCUGGAa------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 13734 0.66 0.496099
Target:  5'- uGCCguGAUGGC-CCGCgagauaugccaaGACCU-CGCCg -3'
miRNA:   3'- gCGG--CUGCCGuGGCGg-----------CUGGAaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 68745 0.66 0.488415
Target:  5'- uGCCGAgcuCGaCcCCGgCGACCU-CGCCa -3'
miRNA:   3'- gCGGCU---GCcGuGGCgGCUGGAaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 33122 0.66 0.47889
Target:  5'- gGCCacGCGGCAgCCGCCGcGCgUgaucUUGCCg -3'
miRNA:   3'- gCGGc-UGCCGU-GGCGGC-UGgA----AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 5428 0.66 0.488415
Target:  5'- aCGUCGA-GGUcugcgcccgcuGCCGCCGACagaUCGCa -3'
miRNA:   3'- -GCGGCUgCCG-----------UGGCGGCUGga-AGCGg -5'
23409 5' -61.3 NC_005259.1 + 33531 0.66 0.507726
Target:  5'- gGUCGACccacGC-CUGCUGAUCgUCGCCg -3'
miRNA:   3'- gCGGCUGc---CGuGGCGGCUGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 35259 0.66 0.47889
Target:  5'- gCGuuGuuCGcGC-CCGCCGcGCCggggUCGCCg -3'
miRNA:   3'- -GCggCu-GC-CGuGGCGGC-UGGa---AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 60073 0.66 0.488415
Target:  5'- gGCUcgGGCGGC-UCGCCGACUUUC-UCg -3'
miRNA:   3'- gCGG--CUGCCGuGGCGGCUGGAAGcGG- -5'
23409 5' -61.3 NC_005259.1 + 43950 0.66 0.488415
Target:  5'- gCGUCGGCgaugggcggGGcCGCCGCCuGACCgagggcggUGCCg -3'
miRNA:   3'- -GCGGCUG---------CC-GUGGCGG-CUGGaa------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 43244 0.66 0.498029
Target:  5'- aGCUGACGauGCCGCCcgcGCCgggUGCCu -3'
miRNA:   3'- gCGGCUGCcgUGGCGGc--UGGaa-GCGG- -5'
23409 5' -61.3 NC_005259.1 + 50686 0.66 0.47889
Target:  5'- uGCCGACgaGGCGCUGCuCG-UCgUCGCg -3'
miRNA:   3'- gCGGCUG--CCGUGGCG-GCuGGaAGCGg -5'
23409 5' -61.3 NC_005259.1 + 35553 0.66 0.527352
Target:  5'- cCGcCCGAUGaCuuGCCGCCGACC---GCCg -3'
miRNA:   3'- -GC-GGCUGCcG--UGGCGGCUGGaagCGG- -5'
23409 5' -61.3 NC_005259.1 + 3065 0.66 0.488415
Target:  5'- cCGUCGACGG-GCCgagGCCGACaagagaGCCg -3'
miRNA:   3'- -GCGGCUGCCgUGG---CGGCUGgaag--CGG- -5'
23409 5' -61.3 NC_005259.1 + 58880 0.66 0.498029
Target:  5'- uCGCCu-CGGCAUCGCCGucgucaucacCCUcgggcUCGUCg -3'
miRNA:   3'- -GCGGcuGCCGUGGCGGCu---------GGA-----AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 5191 0.66 0.47889
Target:  5'- -uCCGACGcCGCCGCCaagcucACCgcgcUCGCCg -3'
miRNA:   3'- gcGGCUGCcGUGGCGGc-----UGGa---AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.