Results 21 - 40 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23409 | 5' | -61.3 | NC_005259.1 | + | 60073 | 0.66 | 0.488415 |
Target: 5'- gGCUcgGGCGGC-UCGCCGACUUUC-UCg -3' miRNA: 3'- gCGG--CUGCCGuGGCGGCUGGAAGcGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 33531 | 0.66 | 0.507726 |
Target: 5'- gGUCGACccacGC-CUGCUGAUCgUCGCCg -3' miRNA: 3'- gCGGCUGc---CGuGGCGGCUGGaAGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 50686 | 0.66 | 0.47889 |
Target: 5'- uGCCGACgaGGCGCUGCuCG-UCgUCGCg -3' miRNA: 3'- gCGGCUG--CCGUGGCG-GCuGGaAGCGg -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 33122 | 0.66 | 0.47889 |
Target: 5'- gGCCacGCGGCAgCCGCCGcGCgUgaucUUGCCg -3' miRNA: 3'- gCGGc-UGCCGU-GGCGGC-UGgA----AGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 64420 | 0.66 | 0.517502 |
Target: 5'- aGCCGugaGGgAUCGCCGACgagcUGCCg -3' miRNA: 3'- gCGGCug-CCgUGGCGGCUGgaa-GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 66846 | 0.66 | 0.507726 |
Target: 5'- uGCCGcccgcACGGgcCACCGaUCGGCCUUguucgcaccgCGCCa -3' miRNA: 3'- gCGGC-----UGCC--GUGGC-GGCUGGAA----------GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 60266 | 0.66 | 0.488415 |
Target: 5'- gGCUGGCcaccaGCGCUGCCGggcgGCCaUCGUCg -3' miRNA: 3'- gCGGCUGc----CGUGGCGGC----UGGaAGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 3296 | 0.66 | 0.507726 |
Target: 5'- uCGCCGgucccucgGCGaGCGCUGCguCGACgUgagCGCCg -3' miRNA: 3'- -GCGGC--------UGC-CGUGGCG--GCUGgAa--GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 24861 | 0.66 | 0.516521 |
Target: 5'- aCGCCGA-GGC-CCGCCucgcucuGACCgcuaucgagUCaGCCg -3' miRNA: 3'- -GCGGCUgCCGuGGCGG-------CUGGa--------AG-CGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 35712 | 0.66 | 0.507726 |
Target: 5'- uCGCUGACgaGGUAuCCGCCcgacGACCcggCGCUg -3' miRNA: 3'- -GCGGCUG--CCGU-GGCGG----CUGGaa-GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 43244 | 0.66 | 0.498029 |
Target: 5'- aGCUGACGauGCCGCCcgcGCCgggUGCCu -3' miRNA: 3'- gCGGCUGCcgUGGCGGc--UGGaa-GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 3065 | 0.66 | 0.488415 |
Target: 5'- cCGUCGACGG-GCCgagGCCGACaagagaGCCg -3' miRNA: 3'- -GCGGCUGCCgUGG---CGGCUGgaag--CGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 37568 | 0.66 | 0.488415 |
Target: 5'- uGUCGACuGC-UCGCCG-CCcgCGCCg -3' miRNA: 3'- gCGGCUGcCGuGGCGGCuGGaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 35259 | 0.66 | 0.47889 |
Target: 5'- gCGuuGuuCGcGC-CCGCCGcGCCggggUCGCCg -3' miRNA: 3'- -GCggCu-GC-CGuGGCGGC-UGGa---AGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 45468 | 0.66 | 0.498029 |
Target: 5'- uGCCGAacgGGCcgagcuucugGCCGCUgguGGCCUuggUCGCUg -3' miRNA: 3'- gCGGCUg--CCG----------UGGCGG---CUGGA---AGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 43950 | 0.66 | 0.488415 |
Target: 5'- gCGUCGGCgaugggcggGGcCGCCGCCuGACCgagggcggUGCCg -3' miRNA: 3'- -GCGGCUG---------CC-GUGGCGG-CUGGaa------GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 5191 | 0.66 | 0.47889 |
Target: 5'- -uCCGACGcCGCCGCCaagcucACCgcgcUCGCCg -3' miRNA: 3'- gcGGCUGCcGUGGCGGc-----UGGa---AGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 61623 | 0.66 | 0.488415 |
Target: 5'- aGCaGAcCGGCACCGCCGACggugaacUCaCCg -3' miRNA: 3'- gCGgCU-GCCGUGGCGGCUGga-----AGcGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 5428 | 0.66 | 0.488415 |
Target: 5'- aCGUCGA-GGUcugcgcccgcuGCCGCCGACagaUCGCa -3' miRNA: 3'- -GCGGCUgCCG-----------UGGCGGCUGga-AGCGg -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 9210 | 0.66 | 0.507726 |
Target: 5'- gGCCGGauCGaGCACCGCUgcggucuuGAUCUUCaagggGCCg -3' miRNA: 3'- gCGGCU--GC-CGUGGCGG--------CUGGAAG-----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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