miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 44332 0.66 0.52439
Target:  5'- gCGCCG-CGuaGCUGCCGGgCUuguuccacggcucgUUGCCg -3'
miRNA:   3'- -GCGGCuGCcgUGGCGGCUgGA--------------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 4570 0.66 0.527352
Target:  5'- aCGCCGAucguCGGCAcguuCC-CCGACaacacCGCCa -3'
miRNA:   3'- -GCGGCU----GCCGU----GGcGGCUGgaa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 28738 0.66 0.517502
Target:  5'- gGCCGAgGGuUACgCGCCcgagcgugaGAUCgUCGCCg -3'
miRNA:   3'- gCGGCUgCC-GUG-GCGG---------CUGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 11061 0.66 0.527352
Target:  5'- uGCCGAuCGGCucagcguggaaGCCGUacggcuCGACCU-CGCa -3'
miRNA:   3'- gCGGCU-GCCG-----------UGGCG------GCUGGAaGCGg -5'
23409 5' -61.3 NC_005259.1 + 64420 0.66 0.517502
Target:  5'- aGCCGugaGGgAUCGCCGACgagcUGCCg -3'
miRNA:   3'- gCGGCug-CCgUGGCGGCUGgaa-GCGG- -5'
23409 5' -61.3 NC_005259.1 + 268 0.66 0.527352
Target:  5'- gGCUagGGCGGUguacGCCGCCuacgcGGCCUcgCGCUg -3'
miRNA:   3'- gCGG--CUGCCG----UGGCGG-----CUGGAa-GCGG- -5'
23409 5' -61.3 NC_005259.1 + 63666 0.67 0.432718
Target:  5'- aCGCCGGacaccucgGGCACCGgCGcGCCggggaucugCGCCu -3'
miRNA:   3'- -GCGGCUg-------CCGUGGCgGC-UGGaa-------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 26778 0.67 0.44084
Target:  5'- cCGCCGGugccucggaacacCaGCGCCGCCGcCCgguUgGCCg -3'
miRNA:   3'- -GCGGCU-------------GcCGUGGCGGCuGGa--AgCGG- -5'
23409 5' -61.3 NC_005259.1 + 36796 0.67 0.432718
Target:  5'- cCGCuCGcguCGGCAUUGuuGACCggCGCg -3'
miRNA:   3'- -GCG-GCu--GCCGUGGCggCUGGaaGCGg -5'
23409 5' -61.3 NC_005259.1 + 33228 0.67 0.432718
Target:  5'- cCGCCGcCGGuCACCGCguacgugccaGAUCUgcccgcagCGCCg -3'
miRNA:   3'- -GCGGCuGCC-GUGGCGg---------CUGGAa-------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 23473 0.67 0.432718
Target:  5'- gGCCu-CGGCAUUGUCGguGCCgaCGCCa -3'
miRNA:   3'- gCGGcuGCCGUGGCGGC--UGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 66060 0.67 0.432718
Target:  5'- cCGCCGugGGC-CUGCUGuaGCCacacagugcaCGCCu -3'
miRNA:   3'- -GCGGCugCCGuGGCGGC--UGGaa--------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 58574 0.67 0.423797
Target:  5'- gGCCGgaucGCGGCGCgGCUG-CCgg-GCCg -3'
miRNA:   3'- gCGGC----UGCCGUGgCGGCuGGaagCGG- -5'
23409 5' -61.3 NC_005259.1 + 2158 0.67 0.423797
Target:  5'- gGCCaGCGGCgucgaGCCGCCGG---UUGCCg -3'
miRNA:   3'- gCGGcUGCCG-----UGGCGGCUggaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 61166 0.67 0.422911
Target:  5'- -aCCGACGGUguaCGCCucgguauGGCCcUCGCCg -3'
miRNA:   3'- gcGGCUGCCGug-GCGG-------CUGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 8056 0.67 0.422026
Target:  5'- -aCCGcCGGuCGCCGCCGACaucgagaucgUGCCg -3'
miRNA:   3'- gcGGCuGCC-GUGGCGGCUGgaa-------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 38640 0.67 0.469457
Target:  5'- aCGCCGAguUGGCGaacUCGCCGAaaucgaccaCC-UCGCUg -3'
miRNA:   3'- -GCGGCU--GCCGU---GGCGGCU---------GGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 43208 0.67 0.469457
Target:  5'- uGUCGAC-GC-CCGCCuGACC--CGCCg -3'
miRNA:   3'- gCGGCUGcCGuGGCGG-CUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 57183 0.67 0.469457
Target:  5'- cCGCCGuaguuCGGC-CCGCgaACCUcgaCGCCg -3'
miRNA:   3'- -GCGGCu----GCCGuGGCGgcUGGAa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 28275 0.67 0.469457
Target:  5'- -aCCGuCGGCuCUGCCGAUgUagGCCa -3'
miRNA:   3'- gcGGCuGCCGuGGCGGCUGgAagCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.