Results 61 - 80 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23409 | 5' | -61.3 | NC_005259.1 | + | 33228 | 0.67 | 0.432718 |
Target: 5'- cCGCCGcCGGuCACCGCguacgugccaGAUCUgcccgcagCGCCg -3' miRNA: 3'- -GCGGCuGCC-GUGGCGg---------CUGGAa-------GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 58574 | 0.67 | 0.423797 |
Target: 5'- gGCCGgaucGCGGCGCgGCUG-CCgg-GCCg -3' miRNA: 3'- gCGGC----UGCCGUGgCGGCuGGaagCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 2158 | 0.67 | 0.423797 |
Target: 5'- gGCCaGCGGCgucgaGCCGCCGG---UUGCCg -3' miRNA: 3'- gCGGcUGCCG-----UGGCGGCUggaAGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 61166 | 0.67 | 0.422911 |
Target: 5'- -aCCGACGGUguaCGCCucgguauGGCCcUCGCCg -3' miRNA: 3'- gcGGCUGCCGug-GCGG-------CUGGaAGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 26778 | 0.67 | 0.44084 |
Target: 5'- cCGCCGGugccucggaacacCaGCGCCGCCGcCCgguUgGCCg -3' miRNA: 3'- -GCGGCU-------------GcCGUGGCGGCuGGa--AgCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 52562 | 0.67 | 0.441747 |
Target: 5'- aGcCCGACauGGUcgACCGgaCCGGCCUgagcgUCGCCg -3' miRNA: 3'- gC-GGCUG--CCG--UGGC--GGCUGGA-----AGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 28133 | 0.67 | 0.441747 |
Target: 5'- uGCCGACguaGGCgaugaGCUGcCCGGCCUcgacgCGCUg -3' miRNA: 3'- gCGGCUG---CCG-----UGGC-GGCUGGAa----GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 34222 | 0.67 | 0.46012 |
Target: 5'- uGUCccCGGCGCUGCCGGUCUU-GCCg -3' miRNA: 3'- gCGGcuGCCGUGGCGGCUGGAAgCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 52192 | 0.67 | 0.454565 |
Target: 5'- gCGCCGACaacgcacggcucaugGGCACCGCguuCCg-CGCCc -3' miRNA: 3'- -GCGGCUG---------------CCGUGGCGgcuGGaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 53624 | 0.67 | 0.454565 |
Target: 5'- gCGUCGAgCGGUGCCGuuGGCCgcUUCcugcacguuguacggGCCg -3' miRNA: 3'- -GCGGCU-GCCGUGGCggCUGG--AAG---------------CGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 7901 | 0.67 | 0.450882 |
Target: 5'- cCGCCGAUaGcGCACCaccuuGCCGcCCUUgGUCu -3' miRNA: 3'- -GCGGCUG-C-CGUGG-----CGGCuGGAAgCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 39154 | 0.67 | 0.450882 |
Target: 5'- uCGCCGACGuugaaACCGCCGAaca-CGUCg -3' miRNA: 3'- -GCGGCUGCcg---UGGCGGCUggaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 43727 | 0.67 | 0.450882 |
Target: 5'- aGUCGAUGGCgGCCauGCCG-CCga-GCCg -3' miRNA: 3'- gCGGCUGCCG-UGG--CGGCuGGaagCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 53742 | 0.67 | 0.445389 |
Target: 5'- uCGCCGGguguccacuCGGUGCCGCCGAacaggaaauaGCCg -3' miRNA: 3'- -GCGGCU---------GCCGUGGCGGCUggaag-----CGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 42216 | 0.67 | 0.441747 |
Target: 5'- uGCCcGCcGCGCCGCCGuCCccgGCCa -3' miRNA: 3'- gCGGcUGcCGUGGCGGCuGGaagCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 8056 | 0.67 | 0.422026 |
Target: 5'- -aCCGcCGGuCGCCGCCGACaucgagaucgUGCCg -3' miRNA: 3'- gcGGCuGCC-GUGGCGGCUGgaa-------GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 12316 | 0.68 | 0.39771 |
Target: 5'- uGUCGGUGcGCACCGCCGccagcucacgcACCgcCGCCu -3' miRNA: 3'- gCGGCUGC-CGUGGCGGC-----------UGGaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 61951 | 0.68 | 0.39771 |
Target: 5'- uGCCGG-GGcCACCGCa-GCCUcacgCGCCg -3' miRNA: 3'- gCGGCUgCC-GUGGCGgcUGGAa---GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 50881 | 0.68 | 0.380901 |
Target: 5'- uGCCGAUGGUcggaucaggaACCGCugCGugCgauagCGCCg -3' miRNA: 3'- gCGGCUGCCG----------UGGCG--GCugGaa---GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 51491 | 0.68 | 0.380901 |
Target: 5'- cCGCCGGggauaGGUcgacGCCGCCGAUCUcgacgCGCg -3' miRNA: 3'- -GCGGCUg----CCG----UGGCGGCUGGAa----GCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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