miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 37179 0.71 0.268636
Target:  5'- aCGCCGcgcgaggacgagcuGCGGCccuuGCCGCC-ACCgcCGCCg -3'
miRNA:   3'- -GCGGC--------------UGCCG----UGGCGGcUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 26094 0.71 0.251838
Target:  5'- cCGCCGAgaagaccccCGaGCagACCGCCGccGCCggUCGCCg -3'
miRNA:   3'- -GCGGCU---------GC-CG--UGGCGGC--UGGa-AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 54744 0.71 0.251838
Target:  5'- uGCCGACaGCgaucagGCCGCCGACCcaaaccUUGCUu -3'
miRNA:   3'- gCGGCUGcCG------UGGCGGCUGGa-----AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 46362 0.71 0.248224
Target:  5'- gGCCgcGAUGGCACCGCCcGGCCccaucucacgcaGCCg -3'
miRNA:   3'- gCGG--CUGCCGUGGCGG-CUGGaag---------CGG- -5'
23409 5' -61.3 NC_005259.1 + 28777 0.71 0.23996
Target:  5'- uGCCGACgaGGUAcCCGCCGGuCgCUaCGCCa -3'
miRNA:   3'- gCGGCUG--CCGU-GGCGGCU-G-GAaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 32367 0.7 0.297236
Target:  5'- cCGCCGuguaggGCgGGCACUGCCcGCCgUCGCg -3'
miRNA:   3'- -GCGGC------UG-CCGUGGCGGcUGGaAGCGg -5'
23409 5' -61.3 NC_005259.1 + 48398 0.7 0.297236
Target:  5'- cCGCCGACGccCGCCGUCGAgucaCCgcgacCGCCa -3'
miRNA:   3'- -GCGGCUGCc-GUGGCGGCU----GGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 8329 0.7 0.30211
Target:  5'- uGCCGACGGCgaucagccggucacGCUGCUG-CCgguaUCGCUc -3'
miRNA:   3'- gCGGCUGCCG--------------UGGCGGCuGGa---AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 7425 0.7 0.304217
Target:  5'- cCGUCGGCGGUgcccgcGCCGCaUGGCag-CGCCg -3'
miRNA:   3'- -GCGGCUGCCG------UGGCG-GCUGgaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 63170 0.7 0.304217
Target:  5'- cCGCCG-CaGCGCCGCCGAggugaucgcaccCCggucgugCGCCu -3'
miRNA:   3'- -GCGGCuGcCGUGGCGGCU------------GGaa-----GCGG- -5'
23409 5' -61.3 NC_005259.1 + 20457 0.7 0.311324
Target:  5'- aGCCGGggUGGCucggaugaccGCCGUCGACCUcgacacCGCCc -3'
miRNA:   3'- gCGGCU--GCCG----------UGGCGGCUGGAa-----GCGG- -5'
23409 5' -61.3 NC_005259.1 + 67160 0.7 0.297236
Target:  5'- uGUCGAUGGUggcggccauGCCGCCGaugaugcccGCCUcgucucccUCGCCg -3'
miRNA:   3'- gCGGCUGCCG---------UGGCGGC---------UGGA--------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 25947 0.7 0.295166
Target:  5'- aCGCCGGugccCGGC-CCGCCGAcgccugcgaugagaCCgggcagCGCCg -3'
miRNA:   3'- -GCGGCU----GCCGuGGCGGCU--------------GGaa----GCGG- -5'
23409 5' -61.3 NC_005259.1 + 14349 0.7 0.293108
Target:  5'- cCGCCGACGcCAucaacucacgugucuCCGCUGAUCUcgucaccgagcUCGCCg -3'
miRNA:   3'- -GCGGCUGCcGU---------------GGCGGCUGGA-----------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 10664 0.7 0.29038
Target:  5'- gCGCCuugagGAUGGuCugCGCCG-CCUcuuugUCGCCg -3'
miRNA:   3'- -GCGG-----CUGCC-GugGCGGCuGGA-----AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 35456 0.7 0.29038
Target:  5'- gCGCCcacCGGCACCGCCaGCac-CGCCc -3'
miRNA:   3'- -GCGGcu-GCCGUGGCGGcUGgaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 26039 0.7 0.283649
Target:  5'- gGCCaGCaGCGCCGCCGgguuggccauGCCgcCGCCg -3'
miRNA:   3'- gCGGcUGcCGUGGCGGC----------UGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 17121 0.7 0.283649
Target:  5'- gCGcCCGAUuccaaGGCAcCCGUCGACCUgCGCa -3'
miRNA:   3'- -GC-GGCUG-----CCGU-GGCGGCUGGAaGCGg -5'
23409 5' -61.3 NC_005259.1 + 44637 0.7 0.283649
Target:  5'- gCGCCuuGAcCGGUGCCGCCGcCCgacucgaaCGCCa -3'
miRNA:   3'- -GCGG--CU-GCCGUGGCGGCuGGaa------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 31246 0.7 0.311324
Target:  5'- gGCgCGGCGGUGCCGCC--CCacaCGCCg -3'
miRNA:   3'- gCG-GCUGCCGUGGCGGcuGGaa-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.