Results 81 - 100 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23409 | 5' | -61.3 | NC_005259.1 | + | 32989 | 0.69 | 0.325913 |
Target: 5'- uGCCGAgGGUGCCGCCacGCCcgaugUCGgCa -3' miRNA: 3'- gCGGCUgCCGUGGCGGc-UGGa----AGCgG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 58690 | 0.69 | 0.325913 |
Target: 5'- uCGCgGGguCGGCucgucgccGCCGCCGucACCaUCGCCg -3' miRNA: 3'- -GCGgCU--GCCG--------UGGCGGC--UGGaAGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 19870 | 0.69 | 0.325913 |
Target: 5'- gCGcCCGcCGGgAUCGCCGACgCcgCGCCc -3' miRNA: 3'- -GC-GGCuGCCgUGGCGGCUG-GaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 29360 | 0.69 | 0.328891 |
Target: 5'- cCGCCGucgaGGCAcccgucgaggucuacCCGCCGACCUaCaCCg -3' miRNA: 3'- -GCGGCug--CCGU---------------GGCGGCUGGAaGcGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 36631 | 0.69 | 0.332641 |
Target: 5'- gCGCCGcccgcaaGGCccgcgaucagcgaGCCGCCG-CCcUCGCCg -3' miRNA: 3'- -GCGGCug-----CCG-------------UGGCGGCuGGaAGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 2195 | 0.69 | 0.341003 |
Target: 5'- gGCCGcuACGGCaaggugcugcgcACCGagcgcCCGGCCU-CGCCa -3' miRNA: 3'- gCGGC--UGCCG------------UGGC-----GGCUGGAaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 51491 | 0.68 | 0.380901 |
Target: 5'- cCGCCGGggauaGGUcgacGCCGCCGAUCUcgacgCGCg -3' miRNA: 3'- -GCGGCUg----CCG----UGGCGGCUGGAa----GCGg -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 45627 | 0.68 | 0.38673 |
Target: 5'- cCGCCGGgccgggcagcgcgcCGGUGCCGCCGugaACac-CGCCg -3' miRNA: 3'- -GCGGCU--------------GCCGUGGCGGC---UGgaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 56274 | 0.68 | 0.38673 |
Target: 5'- nCGCCGcccggcccguauCGGCACCagcagaccacgugGCCgGACCcucgUCGCCg -3' miRNA: 3'- -GCGGCu-----------GCCGUGG-------------CGG-CUGGa---AGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 35801 | 0.68 | 0.388406 |
Target: 5'- gCGCCucaacagGACGGUGCCGUaCGACCccgcauagcCGCCa -3' miRNA: 3'- -GCGG-------CUGCCGUGGCG-GCUGGaa-------GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 6254 | 0.68 | 0.389246 |
Target: 5'- gGUCGAUaucccGCACCGCCG-CCg-CGCCu -3' miRNA: 3'- gCGGCUGc----CGUGGCGGCuGGaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 13551 | 0.68 | 0.389246 |
Target: 5'- uCG-CGAugUGGC-CCGCCGACCc-CGCCc -3' miRNA: 3'- -GCgGCU--GCCGuGGCGGCUGGaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 50881 | 0.68 | 0.380901 |
Target: 5'- uGCCGAUGGUcggaucaggaACCGCugCGugCgauagCGCCg -3' miRNA: 3'- gCGGCUGCCG----------UGGCG--GCugGaa---GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 13420 | 0.68 | 0.380901 |
Target: 5'- gGCCGG-GGuCGCCGCCGggGCCg-CGCUa -3' miRNA: 3'- gCGGCUgCC-GUGGCGGC--UGGaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 10999 | 0.68 | 0.380901 |
Target: 5'- uCGCa-ACGGCACCGC--GCCggacgCGCCg -3' miRNA: 3'- -GCGgcUGCCGUGGCGgcUGGaa---GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 2781 | 0.68 | 0.380901 |
Target: 5'- aGCCGAC-GCACC-UCGACUggUCGCa -3' miRNA: 3'- gCGGCUGcCGUGGcGGCUGGa-AGCGg -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 59497 | 0.68 | 0.380073 |
Target: 5'- aGCCGAgagugucaccgccCGGCgaauuGCUGuuGGCCUuagCGCCg -3' miRNA: 3'- gCGGCU-------------GCCG-----UGGCggCUGGAa--GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 15367 | 0.68 | 0.372676 |
Target: 5'- uCGCCGAUcugGGCgaGCUGCCGcaACCgUgGCCg -3' miRNA: 3'- -GCGGCUG---CCG--UGGCGGC--UGGaAgCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 37718 | 0.68 | 0.372676 |
Target: 5'- uGCCaGACccgaGGCACCGCCG-CCgacgaGCUg -3' miRNA: 3'- gCGG-CUG----CCGUGGCGGCuGGaag--CGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 53271 | 0.68 | 0.389246 |
Target: 5'- uGUCGcCGGUGCCGCCaagaucGACCUcaGCCc -3' miRNA: 3'- gCGGCuGCCGUGGCGG------CUGGAagCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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