miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 44995 0.86 0.022011
Target:  5'- uGCCGA-GGCACCGCCGACCgccggggccgCGCCg -3'
miRNA:   3'- gCGGCUgCCGUGGCGGCUGGaa--------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 15277 0.86 0.02326
Target:  5'- uCGCCGACGaGCaagcgaucuacACCGCCGACCU-CGCCg -3'
miRNA:   3'- -GCGGCUGC-CG-----------UGGCGGCUGGAaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 1811 0.84 0.028994
Target:  5'- gGCCGACGcgaGCAaucCCGCCGACCUgcUCGCCg -3'
miRNA:   3'- gCGGCUGC---CGU---GGCGGCUGGA--AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 12160 0.81 0.054372
Target:  5'- cCGCCGACGGCACCGCCcucggucgaACCU--GCCg -3'
miRNA:   3'- -GCGGCUGCCGUGGCGGc--------UGGAagCGG- -5'
23409 5' -61.3 NC_005259.1 + 23653 0.8 0.058978
Target:  5'- cCGCCGACGGCgacggcuggACCGCCGACCccgagcaggCGCa -3'
miRNA:   3'- -GCGGCUGCCG---------UGGCGGCUGGaa-------GCGg -5'
23409 5' -61.3 NC_005259.1 + 63387 0.8 0.060595
Target:  5'- uCGCCGAUGGCcCaCGCCGACCaauggUUGCCc -3'
miRNA:   3'- -GCGGCUGCCGuG-GCGGCUGGa----AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 35520 0.77 0.093076
Target:  5'- cCGCCGcCGGgcaCACCGCCcGCCgUCGCCg -3'
miRNA:   3'- -GCGGCuGCC---GUGGCGGcUGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 37377 0.77 0.093076
Target:  5'- aCGCCcuCGGCACCGCCcGCCg-CGCCg -3'
miRNA:   3'- -GCGGcuGCCGUGGCGGcUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 46908 0.77 0.098148
Target:  5'- cCGCCGagcaguccGCGuGCGCCGCCGAgCUUgccCGCCg -3'
miRNA:   3'- -GCGGC--------UGC-CGUGGCGGCUgGAA---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 46745 0.77 0.100781
Target:  5'- uGCCcgcGAUGGCugCGCCGAcaCCUgCGCCg -3'
miRNA:   3'- gCGG---CUGCCGugGCGGCU--GGAaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 30770 0.77 0.106248
Target:  5'- aCGCCGGUGGCACCGCUG-CCguugUUCGCg -3'
miRNA:   3'- -GCGGCUGCCGUGGCGGCuGG----AAGCGg -5'
23409 5' -61.3 NC_005259.1 + 45314 0.76 0.111993
Target:  5'- aCGCCGA-GGcCGCCGCCGaacugcgugGCCUgCGCCg -3'
miRNA:   3'- -GCGGCUgCC-GUGGCGGC---------UGGAaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 43657 0.76 0.114973
Target:  5'- gCGCCGACGGUgucGuuGCCGAUCacacCGCCg -3'
miRNA:   3'- -GCGGCUGCCG---UggCGGCUGGaa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 58939 0.76 0.118027
Target:  5'- gGCgCGGUGGCAgCGUCGGCCUUgGCCa -3'
miRNA:   3'- gCG-GCUGCCGUgGCGGCUGGAAgCGG- -5'
23409 5' -61.3 NC_005259.1 + 22668 0.76 0.118027
Target:  5'- uCGCCGACGcacugacCGCCGCCGAuuuccCCgccgUCGCCg -3'
miRNA:   3'- -GCGGCUGCc------GUGGCGGCU-----GGa---AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 6432 0.76 0.118027
Target:  5'- uCGCCGAuguCGGCACCGUCGcGCUgaucggcagcgUCGCCg -3'
miRNA:   3'- -GCGGCU---GCCGUGGCGGC-UGGa----------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 53222 0.75 0.132383
Target:  5'- uCGCCcGCGcccugcuugagguucGCGCCGCCGACaccgUCGCCg -3'
miRNA:   3'- -GCGGcUGC---------------CGUGGCGGCUGga--AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 18525 0.75 0.134461
Target:  5'- cCGCCGAuuuCGGCAaggcagagcCCGCCGAcgaaCCaUCGCCg -3'
miRNA:   3'- -GCGGCU---GCCGU---------GGCGGCU----GGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 45413 0.75 0.149097
Target:  5'- gCGCUGAUGGcCGCCGCCGcuGCCUcguagGCCg -3'
miRNA:   3'- -GCGGCUGCC-GUGGCGGC--UGGAag---CGG- -5'
23409 5' -61.3 NC_005259.1 + 36704 0.74 0.161012
Target:  5'- cCGCCGAUGaGCucguGCCGCuCGACC--CGCCg -3'
miRNA:   3'- -GCGGCUGC-CG----UGGCG-GCUGGaaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.