miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 67063 0.74 0.169425
Target:  5'- gCGCCGAUcucaagGGCcagcgugaCGCCGACCUUgGCCc -3'
miRNA:   3'- -GCGGCUG------CCGug------GCGGCUGGAAgCGG- -5'
23409 5' -61.3 NC_005259.1 + 22591 0.74 0.169425
Target:  5'- gGUCGACGcGaucaagcugcaCGCCGCCGACCgcCGCCc -3'
miRNA:   3'- gCGGCUGC-C-----------GUGGCGGCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 36865 0.74 0.173777
Target:  5'- gCGCCGuugcUGGCACCGCCcgcGCCgacgaCGCCg -3'
miRNA:   3'- -GCGGCu---GCCGUGGCGGc--UGGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 6956 0.73 0.182782
Target:  5'- cCGCCGACGGCAuccacacccUCGauGACCUaaCGCCg -3'
miRNA:   3'- -GCGGCUGCCGU---------GGCggCUGGAa-GCGG- -5'
23409 5' -61.3 NC_005259.1 + 47185 0.73 0.187437
Target:  5'- gGUCGGCGGUGCCGUCGGCgaagaacUUGCCg -3'
miRNA:   3'- gCGGCUGCCGUGGCGGCUGga-----AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 44397 0.73 0.192197
Target:  5'- uCGCCGAgcacguCGGUGcCCGCCuGACCggcagCGCCg -3'
miRNA:   3'- -GCGGCU------GCCGU-GGCGG-CUGGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 43295 0.73 0.195591
Target:  5'- cCGCCGACgcgcccgccugaauGGCugCGuuGGCCacCGCCu -3'
miRNA:   3'- -GCGGCUG--------------CCGugGCggCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 8834 0.73 0.204053
Target:  5'- aGuuGACGcGCugCGCCGACCaccacagcgugccCGCCg -3'
miRNA:   3'- gCggCUGC-CGugGCGGCUGGaa-----------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 42943 0.72 0.205579
Target:  5'- uCGCCGugGGCgagGCCGCCGuugucgaacgggauGCCggggaucaucgUUGCCg -3'
miRNA:   3'- -GCGGCugCCG---UGGCGGC--------------UGGa----------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 46555 0.72 0.212306
Target:  5'- uCGCCGACcGCGCCuauggucgcggcGUCGACCg-CGCCg -3'
miRNA:   3'- -GCGGCUGcCGUGG------------CGGCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 37641 0.72 0.212306
Target:  5'- uGcCCGAUGaccGCACCGCCG-CCgcCGCCg -3'
miRNA:   3'- gC-GGCUGC---CGUGGCGGCuGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 47943 0.72 0.212306
Target:  5'- aGCCGAugaCGGCGgUGCCGaugGCCgccgCGCCg -3'
miRNA:   3'- gCGGCU---GCCGUgGCGGC---UGGaa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 48606 0.72 0.217608
Target:  5'- gCGCgGGCGcUACCGCCGugCgcacugccUCGCCg -3'
miRNA:   3'- -GCGgCUGCcGUGGCGGCugGa-------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 62952 0.72 0.217608
Target:  5'- uGCCG--GGCACCGCUGuCCUcgUCGUCu -3'
miRNA:   3'- gCGGCugCCGUGGCGGCuGGA--AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 48511 0.72 0.228553
Target:  5'- gGCCGcgacuuGCcGCACUGCCGACUUcucggcgcugUCGCCg -3'
miRNA:   3'- gCGGC------UGcCGUGGCGGCUGGA----------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 17314 0.72 0.228553
Target:  5'- aCGCCGAgCGGUACCccgaggguguGCCGGUCaacgUCGCCg -3'
miRNA:   3'- -GCGGCU-GCCGUGG----------CGGCUGGa---AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 26412 0.72 0.234198
Target:  5'- gGCgCGGCGGUGCCGCCGuagaaCgcacCGCCg -3'
miRNA:   3'- gCG-GCUGCCGUGGCGGCug---Gaa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 28777 0.71 0.23996
Target:  5'- uGCCGACgaGGUAcCCGCCGGuCgCUaCGCCa -3'
miRNA:   3'- gCGGCUG--CCGU-GGCGGCU-G-GAaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 46362 0.71 0.248224
Target:  5'- gGCCgcGAUGGCACCGCCcGGCCccaucucacgcaGCCg -3'
miRNA:   3'- gCGG--CUGCCGUGGCGG-CUGGaag---------CGG- -5'
23409 5' -61.3 NC_005259.1 + 26094 0.71 0.251838
Target:  5'- cCGCCGAgaagaccccCGaGCagACCGCCGccGCCggUCGCCg -3'
miRNA:   3'- -GCGGCU---------GC-CG--UGGCGGC--UGGa-AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.