miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 31246 0.7 0.311324
Target:  5'- gGCgCGGCGGUGCCGCC--CCacaCGCCg -3'
miRNA:   3'- gCG-GCUGCCGUGGCGGcuGGaa-GCGG- -5'
23409 5' -61.3 NC_005259.1 + 20457 0.7 0.311324
Target:  5'- aGCCGGggUGGCucggaugaccGCCGUCGACCUcgacacCGCCc -3'
miRNA:   3'- gCGGCU--GCCG----------UGGCGGCUGGAa-----GCGG- -5'
23409 5' -61.3 NC_005259.1 + 46950 0.7 0.314201
Target:  5'- cCGCCGACcgcguugagcuuguuGGCcacGCCGCCGAUgaUCggGCCg -3'
miRNA:   3'- -GCGGCUG---------------CCG---UGGCGGCUGgaAG--CGG- -5'
23409 5' -61.3 NC_005259.1 + 3137 0.69 0.318555
Target:  5'- aGCgGACGGCACCGCCcguggGACUacacggugaUGCCc -3'
miRNA:   3'- gCGgCUGCCGUGGCGG-----CUGGaa-------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 45905 0.69 0.318555
Target:  5'- gGUCGGCGGgCACCGCUgguaGACCgaggcUCuGCCc -3'
miRNA:   3'- gCGGCUGCC-GUGGCGG----CUGGa----AG-CGG- -5'
23409 5' -61.3 NC_005259.1 + 19870 0.69 0.325913
Target:  5'- gCGcCCGcCGGgAUCGCCGACgCcgCGCCc -3'
miRNA:   3'- -GC-GGCuGCCgUGGCGGCUG-GaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 58690 0.69 0.325913
Target:  5'- uCGCgGGguCGGCucgucgccGCCGCCGucACCaUCGCCg -3'
miRNA:   3'- -GCGgCU--GCCG--------UGGCGGC--UGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 32989 0.69 0.325913
Target:  5'- uGCCGAgGGUGCCGCCacGCCcgaugUCGgCa -3'
miRNA:   3'- gCGGCUgCCGUGGCGGc-UGGa----AGCgG- -5'
23409 5' -61.3 NC_005259.1 + 31563 0.69 0.325913
Target:  5'- uGCCG-CuGCACCGCgccUGAUCgUCGCCa -3'
miRNA:   3'- gCGGCuGcCGUGGCG---GCUGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 28964 0.69 0.325913
Target:  5'- uCGCCGAgguCGGUGCCGa-GGCCgcgagCGCCc -3'
miRNA:   3'- -GCGGCU---GCCGUGGCggCUGGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 29360 0.69 0.328891
Target:  5'- cCGCCGucgaGGCAcccgucgaggucuacCCGCCGACCUaCaCCg -3'
miRNA:   3'- -GCGGCug--CCGU---------------GGCGGCUGGAaGcGG- -5'
23409 5' -61.3 NC_005259.1 + 36631 0.69 0.332641
Target:  5'- gCGCCGcccgcaaGGCccgcgaucagcgaGCCGCCG-CCcUCGCCg -3'
miRNA:   3'- -GCGGCug-----CCG-------------UGGCGGCuGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 2195 0.69 0.341003
Target:  5'- gGCCGcuACGGCaaggugcugcgcACCGagcgcCCGGCCU-CGCCa -3'
miRNA:   3'- gCGGC--UGCCG------------UGGC-----GGCUGGAaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 24116 0.69 0.341003
Target:  5'- gGaCCgGGCGGggacuacacCGCCGCCGcCCUgcUCGCCg -3'
miRNA:   3'- gC-GG-CUGCC---------GUGGCGGCuGGA--AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 60126 0.69 0.341003
Target:  5'- -aUCGGCGGCcucgucCUGCgCGGCCUUgGCCg -3'
miRNA:   3'- gcGGCUGCCGu-----GGCG-GCUGGAAgCGG- -5'
23409 5' -61.3 NC_005259.1 + 11863 0.69 0.341003
Target:  5'- cCGUCGGCGaacGUgACCGCCGcACCgucccaaUCGCCg -3'
miRNA:   3'- -GCGGCUGC---CG-UGGCGGC-UGGa------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 34467 0.69 0.344081
Target:  5'- uCGCUGAUGaGCAgcuugguggugucccCCGCCGACgCgacgacgaugUCGCCg -3'
miRNA:   3'- -GCGGCUGC-CGU---------------GGCGGCUG-Ga---------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 63120 0.69 0.348736
Target:  5'- cCGUCGAgGGUggugaggucguaGCCGCUGuCC-UCGCCc -3'
miRNA:   3'- -GCGGCUgCCG------------UGGCGGCuGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 9157 0.69 0.348736
Target:  5'- cCGUCGACGGCauGCCGgUGGCa---GCCg -3'
miRNA:   3'- -GCGGCUGCCG--UGGCgGCUGgaagCGG- -5'
23409 5' -61.3 NC_005259.1 + 18488 0.69 0.348736
Target:  5'- aCGCCGACGaGCuacGCCGaCGACCUcaGCg -3'
miRNA:   3'- -GCGGCUGC-CG---UGGCgGCUGGAagCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.