miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 63120 0.69 0.348736
Target:  5'- cCGUCGAgGGUggugaggucguaGCCGCUGuCC-UCGCCc -3'
miRNA:   3'- -GCGGCUgCCG------------UGGCGGCuGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 20650 0.69 0.348736
Target:  5'- aCGuUCGGCGGCACCGg-GGCCgaggaCGCCa -3'
miRNA:   3'- -GC-GGCUGCCGUGGCggCUGGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 737 0.69 0.356593
Target:  5'- -aCCGGCGGUGCCuacGCCG-CCggUGCCu -3'
miRNA:   3'- gcGGCUGCCGUGG---CGGCuGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 37221 0.69 0.356593
Target:  5'- nCGCCGcCGGgG-CGCUGGCCcgUGCCg -3'
miRNA:   3'- -GCGGCuGCCgUgGCGGCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 43817 0.69 0.356593
Target:  5'- uGCCGGgcGUACCGCCGgacacagggccGCCgcUCGCCa -3'
miRNA:   3'- gCGGCUgcCGUGGCGGC-----------UGGa-AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 38971 0.69 0.364573
Target:  5'- uGCaCGAUGGCAUCGCgGAuacCCUgcccaGCCu -3'
miRNA:   3'- gCG-GCUGCCGUGGCGgCU---GGAag---CGG- -5'
23409 5' -61.3 NC_005259.1 + 15367 0.68 0.372676
Target:  5'- uCGCCGAUcugGGCgaGCUGCCGcaACCgUgGCCg -3'
miRNA:   3'- -GCGGCUG---CCG--UGGCGGC--UGGaAgCGG- -5'
23409 5' -61.3 NC_005259.1 + 37718 0.68 0.372676
Target:  5'- uGCCaGACccgaGGCACCGCCG-CCgacgaGCUg -3'
miRNA:   3'- gCGG-CUG----CCGUGGCGGCuGGaag--CGG- -5'
23409 5' -61.3 NC_005259.1 + 61123 0.68 0.372676
Target:  5'- aGCCGAgcaCGGUGCCGUucuCGAUCcgUGCCg -3'
miRNA:   3'- gCGGCU---GCCGUGGCG---GCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 59497 0.68 0.380073
Target:  5'- aGCCGAgagugucaccgccCGGCgaauuGCUGuuGGCCUuagCGCCg -3'
miRNA:   3'- gCGGCU-------------GCCG-----UGGCggCUGGAa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 51491 0.68 0.380901
Target:  5'- cCGCCGGggauaGGUcgacGCCGCCGAUCUcgacgCGCg -3'
miRNA:   3'- -GCGGCUg----CCG----UGGCGGCUGGAa----GCGg -5'
23409 5' -61.3 NC_005259.1 + 50881 0.68 0.380901
Target:  5'- uGCCGAUGGUcggaucaggaACCGCugCGugCgauagCGCCg -3'
miRNA:   3'- gCGGCUGCCG----------UGGCG--GCugGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 13420 0.68 0.380901
Target:  5'- gGCCGG-GGuCGCCGCCGggGCCg-CGCUa -3'
miRNA:   3'- gCGGCUgCC-GUGGCGGC--UGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 10999 0.68 0.380901
Target:  5'- uCGCa-ACGGCACCGC--GCCggacgCGCCg -3'
miRNA:   3'- -GCGgcUGCCGUGGCGgcUGGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 2781 0.68 0.380901
Target:  5'- aGCCGAC-GCACC-UCGACUggUCGCa -3'
miRNA:   3'- gCGGCUGcCGUGGcGGCUGGa-AGCGg -5'
23409 5' -61.3 NC_005259.1 + 45627 0.68 0.38673
Target:  5'- cCGCCGGgccgggcagcgcgcCGGUGCCGCCGugaACac-CGCCg -3'
miRNA:   3'- -GCGGCU--------------GCCGUGGCGGC---UGgaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 56274 0.68 0.38673
Target:  5'- nCGCCGcccggcccguauCGGCACCagcagaccacgugGCCgGACCcucgUCGCCg -3'
miRNA:   3'- -GCGGCu-----------GCCGUGG-------------CGG-CUGGa---AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 35801 0.68 0.388406
Target:  5'- gCGCCucaacagGACGGUGCCGUaCGACCccgcauagcCGCCa -3'
miRNA:   3'- -GCGG-------CUGCCGUGGCG-GCUGGaa-------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 13551 0.68 0.389246
Target:  5'- uCG-CGAugUGGC-CCGCCGACCc-CGCCc -3'
miRNA:   3'- -GCgGCU--GCCGuGGCGGCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 53271 0.68 0.389246
Target:  5'- uGUCGcCGGUGCCGCCaagaucGACCUcaGCCc -3'
miRNA:   3'- gCGGCuGCCGUGGCGG------CUGGAagCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.