miRNA display CGI


Results 101 - 120 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 53271 0.68 0.389246
Target:  5'- uGUCGcCGGUGCCGCCaagaucGACCUcaGCCc -3'
miRNA:   3'- gCGGCuGCCGUGGCGG------CUGGAagCGG- -5'
23409 5' -61.3 NC_005259.1 + 13551 0.68 0.389246
Target:  5'- uCG-CGAugUGGC-CCGCCGACCc-CGCCc -3'
miRNA:   3'- -GCgGCU--GCCGuGGCGGCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 6254 0.68 0.389246
Target:  5'- gGUCGAUaucccGCACCGCCG-CCg-CGCCu -3'
miRNA:   3'- gCGGCUGc----CGUGGCGGCuGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 47298 0.68 0.39771
Target:  5'- uCGCCGGacagcgaccccuUGGCcugACCGgCGGCCUUgGUCa -3'
miRNA:   3'- -GCGGCU------------GCCG---UGGCgGCUGGAAgCGG- -5'
23409 5' -61.3 NC_005259.1 + 36210 0.68 0.39771
Target:  5'- uGCuCGACaGCGCgaUGCCGAgcaCCUUgGCCa -3'
miRNA:   3'- gCG-GCUGcCGUG--GCGGCU---GGAAgCGG- -5'
23409 5' -61.3 NC_005259.1 + 61951 0.68 0.39771
Target:  5'- uGCCGG-GGcCACCGCa-GCCUcacgCGCCg -3'
miRNA:   3'- gCGGCUgCC-GUGGCGgcUGGAa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 29679 0.68 0.39771
Target:  5'- uGCCGGacGCGCCGCaaucgaGACCgaUGCCg -3'
miRNA:   3'- gCGGCUgcCGUGGCGg-----CUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 12537 0.68 0.39771
Target:  5'- aGCCGAgcgagccccaCGGCAUUGCCGgggugGCC--CGCCa -3'
miRNA:   3'- gCGGCU----------GCCGUGGCGGC-----UGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 12316 0.68 0.39771
Target:  5'- uGUCGGUGcGCACCGCCGccagcucacgcACCgcCGCCu -3'
miRNA:   3'- gCGGCUGC-CGUGGCGGC-----------UGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 29056 0.68 0.406291
Target:  5'- aGCCGcgagcGCGGUAUCGgcCCGAUCUgCGCUg -3'
miRNA:   3'- gCGGC-----UGCCGUGGC--GGCUGGAaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 36969 0.68 0.414987
Target:  5'- cCGCCucGGCccGCACCGCCGAacgUCGCa -3'
miRNA:   3'- -GCGG--CUGc-CGUGGCGGCUggaAGCGg -5'
23409 5' -61.3 NC_005259.1 + 8056 0.67 0.422026
Target:  5'- -aCCGcCGGuCGCCGCCGACaucgagaucgUGCCg -3'
miRNA:   3'- gcGGCuGCC-GUGGCGGCUGgaa-------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 61166 0.67 0.422911
Target:  5'- -aCCGACGGUguaCGCCucgguauGGCCcUCGCCg -3'
miRNA:   3'- gcGGCUGCCGug-GCGG-------CUGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 58574 0.67 0.423797
Target:  5'- gGCCGgaucGCGGCGCgGCUG-CCgg-GCCg -3'
miRNA:   3'- gCGGC----UGCCGUGgCGGCuGGaagCGG- -5'
23409 5' -61.3 NC_005259.1 + 2158 0.67 0.423797
Target:  5'- gGCCaGCGGCgucgaGCCGCCGG---UUGCCg -3'
miRNA:   3'- gCGGcUGCCG-----UGGCGGCUggaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 4921 0.67 0.432718
Target:  5'- uGCCGuAgGGCACCGCgUGAUCgUCcgGCCc -3'
miRNA:   3'- gCGGC-UgCCGUGGCG-GCUGGaAG--CGG- -5'
23409 5' -61.3 NC_005259.1 + 23473 0.67 0.432718
Target:  5'- gGCCu-CGGCAUUGUCGguGCCgaCGCCa -3'
miRNA:   3'- gCGGcuGCCGUGGCGGC--UGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 33228 0.67 0.432718
Target:  5'- cCGCCGcCGGuCACCGCguacgugccaGAUCUgcccgcagCGCCg -3'
miRNA:   3'- -GCGGCuGCC-GUGGCGg---------CUGGAa-------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 63666 0.67 0.432718
Target:  5'- aCGCCGGacaccucgGGCACCGgCGcGCCggggaucugCGCCu -3'
miRNA:   3'- -GCGGCUg-------CCGUGGCgGC-UGGaa-------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 66060 0.67 0.432718
Target:  5'- cCGCCGugGGC-CUGCUGuaGCCacacagugcaCGCCu -3'
miRNA:   3'- -GCGGCugCCGuGGCGGC--UGGaa--------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.