miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 60266 0.66 0.488415
Target:  5'- gGCUGGCcaccaGCGCUGCCGggcgGCCaUCGUCg -3'
miRNA:   3'- gCGGCUGc----CGUGGCGGC----UGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 3065 0.66 0.488415
Target:  5'- cCGUCGACGG-GCCgagGCCGACaagagaGCCg -3'
miRNA:   3'- -GCGGCUGCCgUGG---CGGCUGgaag--CGG- -5'
23409 5' -61.3 NC_005259.1 + 50686 0.66 0.47889
Target:  5'- uGCCGACgaGGCGCUGCuCG-UCgUCGCg -3'
miRNA:   3'- gCGGCUG--CCGUGGCG-GCuGGaAGCGg -5'
23409 5' -61.3 NC_005259.1 + 35259 0.66 0.47889
Target:  5'- gCGuuGuuCGcGC-CCGCCGcGCCggggUCGCCg -3'
miRNA:   3'- -GCggCu-GC-CGuGGCGGC-UGGa---AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 33122 0.66 0.47889
Target:  5'- gGCCacGCGGCAgCCGCCGcGCgUgaucUUGCCg -3'
miRNA:   3'- gCGGc-UGCCGU-GGCGGC-UGgA----AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 5191 0.66 0.47889
Target:  5'- -uCCGACGcCGCCGCCaagcucACCgcgcUCGCCg -3'
miRNA:   3'- gcGGCUGCcGUGGCGGc-----UGGa---AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 8567 0.67 0.469457
Target:  5'- gCGCCG-CaGCACCGCC-ACCgcccaCGCa -3'
miRNA:   3'- -GCGGCuGcCGUGGCGGcUGGaa---GCGg -5'
23409 5' -61.3 NC_005259.1 + 28275 0.67 0.469457
Target:  5'- -aCCGuCGGCuCUGCCGAUgUagGCCa -3'
miRNA:   3'- gcGGCuGCCGuGGCGGCUGgAagCGG- -5'
23409 5' -61.3 NC_005259.1 + 43208 0.67 0.469457
Target:  5'- uGUCGAC-GC-CCGCCuGACC--CGCCg -3'
miRNA:   3'- gCGGCUGcCGuGGCGG-CUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 57183 0.67 0.469457
Target:  5'- cCGCCGuaguuCGGC-CCGCgaACCUcgaCGCCg -3'
miRNA:   3'- -GCGGCu----GCCGuGGCGgcUGGAa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 38640 0.67 0.469457
Target:  5'- aCGCCGAguUGGCGaacUCGCCGAaaucgaccaCC-UCGCUg -3'
miRNA:   3'- -GCGGCU--GCCGU---GGCGGCU---------GGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 16625 0.67 0.465711
Target:  5'- gGCCGAggcaggccaccuaCGGCgacGCCGCCGACaauuucggggugacCGCCu -3'
miRNA:   3'- gCGGCU-------------GCCG---UGGCGGCUGgaa-----------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 55872 0.67 0.46012
Target:  5'- uCGCCGAgCGccuCGCC-CCGACCUcgggggucgCGCCg -3'
miRNA:   3'- -GCGGCU-GCc--GUGGcGGCUGGAa--------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 34222 0.67 0.46012
Target:  5'- uGUCccCGGCGCUGCCGGUCUU-GCCg -3'
miRNA:   3'- gCGGcuGCCGUGGCGGCUGGAAgCGG- -5'
23409 5' -61.3 NC_005259.1 + 53624 0.67 0.454565
Target:  5'- gCGUCGAgCGGUGCCGuuGGCCgcUUCcugcacguuguacggGCCg -3'
miRNA:   3'- -GCGGCU-GCCGUGGCggCUGG--AAG---------------CGG- -5'
23409 5' -61.3 NC_005259.1 + 52192 0.67 0.454565
Target:  5'- gCGCCGACaacgcacggcucaugGGCACCGCguuCCg-CGCCc -3'
miRNA:   3'- -GCGGCUG---------------CCGUGGCGgcuGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 39154 0.67 0.450882
Target:  5'- uCGCCGACGuugaaACCGCCGAaca-CGUCg -3'
miRNA:   3'- -GCGGCUGCcg---UGGCGGCUggaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 9698 0.67 0.450882
Target:  5'- uCGCCGcucACugGGCACCGUCcucgGGCCggucgagcUCGCCg -3'
miRNA:   3'- -GCGGC---UG--CCGUGGCGG----CUGGa-------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 43727 0.67 0.450882
Target:  5'- aGUCGAUGGCgGCCauGCCG-CCga-GCCg -3'
miRNA:   3'- gCGGCUGCCG-UGG--CGGCuGGaagCGG- -5'
23409 5' -61.3 NC_005259.1 + 7901 0.67 0.450882
Target:  5'- cCGCCGAUaGcGCACCaccuuGCCGcCCUUgGUCu -3'
miRNA:   3'- -GCGGCUG-C-CGUGG-----CGGCuGGAAgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.