miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 53742 0.67 0.445389
Target:  5'- uCGCCGGguguccacuCGGUGCCGCCGAacaggaaauaGCCg -3'
miRNA:   3'- -GCGGCU---------GCCGUGGCGGCUggaag-----CGG- -5'
23409 5' -61.3 NC_005259.1 + 52562 0.67 0.441747
Target:  5'- aGcCCGACauGGUcgACCGgaCCGGCCUgagcgUCGCCg -3'
miRNA:   3'- gC-GGCUG--CCG--UGGC--GGCUGGA-----AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 28133 0.67 0.441747
Target:  5'- uGCCGACguaGGCgaugaGCUGcCCGGCCUcgacgCGCUg -3'
miRNA:   3'- gCGGCUG---CCG-----UGGC-GGCUGGAa----GCGG- -5'
23409 5' -61.3 NC_005259.1 + 42216 0.67 0.441747
Target:  5'- uGCCcGCcGCGCCGCCGuCCccgGCCa -3'
miRNA:   3'- gCGGcUGcCGUGGCGGCuGGaagCGG- -5'
23409 5' -61.3 NC_005259.1 + 26778 0.67 0.44084
Target:  5'- cCGCCGGugccucggaacacCaGCGCCGCCGcCCgguUgGCCg -3'
miRNA:   3'- -GCGGCU-------------GcCGUGGCGGCuGGa--AgCGG- -5'
23409 5' -61.3 NC_005259.1 + 63666 0.67 0.432718
Target:  5'- aCGCCGGacaccucgGGCACCGgCGcGCCggggaucugCGCCu -3'
miRNA:   3'- -GCGGCUg-------CCGUGGCgGC-UGGaa-------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 33228 0.67 0.432718
Target:  5'- cCGCCGcCGGuCACCGCguacgugccaGAUCUgcccgcagCGCCg -3'
miRNA:   3'- -GCGGCuGCC-GUGGCGg---------CUGGAa-------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 23473 0.67 0.432718
Target:  5'- gGCCu-CGGCAUUGUCGguGCCgaCGCCa -3'
miRNA:   3'- gCGGcuGCCGUGGCGGC--UGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 4921 0.67 0.432718
Target:  5'- uGCCGuAgGGCACCGCgUGAUCgUCcgGCCc -3'
miRNA:   3'- gCGGC-UgCCGUGGCG-GCUGGaAG--CGG- -5'
23409 5' -61.3 NC_005259.1 + 1436 0.67 0.432718
Target:  5'- uGCuCGGgcUGGCACUGCucgCGugCUUCGCa -3'
miRNA:   3'- gCG-GCU--GCCGUGGCG---GCugGAAGCGg -5'
23409 5' -61.3 NC_005259.1 + 36796 0.67 0.432718
Target:  5'- cCGCuCGcguCGGCAUUGuuGACCggCGCg -3'
miRNA:   3'- -GCG-GCu--GCCGUGGCggCUGGaaGCGg -5'
23409 5' -61.3 NC_005259.1 + 66060 0.67 0.432718
Target:  5'- cCGCCGugGGC-CUGCUGuaGCCacacagugcaCGCCu -3'
miRNA:   3'- -GCGGCugCCGuGGCGGC--UGGaa--------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 2158 0.67 0.423797
Target:  5'- gGCCaGCGGCgucgaGCCGCCGG---UUGCCg -3'
miRNA:   3'- gCGGcUGCCG-----UGGCGGCUggaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 58574 0.67 0.423797
Target:  5'- gGCCGgaucGCGGCGCgGCUG-CCgg-GCCg -3'
miRNA:   3'- gCGGC----UGCCGUGgCGGCuGGaagCGG- -5'
23409 5' -61.3 NC_005259.1 + 61166 0.67 0.422911
Target:  5'- -aCCGACGGUguaCGCCucgguauGGCCcUCGCCg -3'
miRNA:   3'- gcGGCUGCCGug-GCGG-------CUGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 8056 0.67 0.422026
Target:  5'- -aCCGcCGGuCGCCGCCGACaucgagaucgUGCCg -3'
miRNA:   3'- gcGGCuGCC-GUGGCGGCUGgaa-------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 36969 0.68 0.414987
Target:  5'- cCGCCucGGCccGCACCGCCGAacgUCGCa -3'
miRNA:   3'- -GCGG--CUGc-CGUGGCGGCUggaAGCGg -5'
23409 5' -61.3 NC_005259.1 + 29056 0.68 0.406291
Target:  5'- aGCCGcgagcGCGGUAUCGgcCCGAUCUgCGCUg -3'
miRNA:   3'- gCGGC-----UGCCGUGGC--GGCUGGAaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 47298 0.68 0.39771
Target:  5'- uCGCCGGacagcgaccccuUGGCcugACCGgCGGCCUUgGUCa -3'
miRNA:   3'- -GCGGCU------------GCCG---UGGCgGCUGGAAgCGG- -5'
23409 5' -61.3 NC_005259.1 + 36210 0.68 0.39771
Target:  5'- uGCuCGACaGCGCgaUGCCGAgcaCCUUgGCCa -3'
miRNA:   3'- gCG-GCUGcCGUG--GCGGCU---GGAAgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.