miRNA display CGI


Results 81 - 100 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 29679 0.68 0.39771
Target:  5'- uGCCGGacGCGCCGCaaucgaGACCgaUGCCg -3'
miRNA:   3'- gCGGCUgcCGUGGCGg-----CUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 61951 0.68 0.39771
Target:  5'- uGCCGG-GGcCACCGCa-GCCUcacgCGCCg -3'
miRNA:   3'- gCGGCUgCC-GUGGCGgcUGGAa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 47298 0.68 0.39771
Target:  5'- uCGCCGGacagcgaccccuUGGCcugACCGgCGGCCUUgGUCa -3'
miRNA:   3'- -GCGGCU------------GCCG---UGGCgGCUGGAAgCGG- -5'
23409 5' -61.3 NC_005259.1 + 36210 0.68 0.39771
Target:  5'- uGCuCGACaGCGCgaUGCCGAgcaCCUUgGCCa -3'
miRNA:   3'- gCG-GCUGcCGUG--GCGGCU---GGAAgCGG- -5'
23409 5' -61.3 NC_005259.1 + 53271 0.68 0.389246
Target:  5'- uGUCGcCGGUGCCGCCaagaucGACCUcaGCCc -3'
miRNA:   3'- gCGGCuGCCGUGGCGG------CUGGAagCGG- -5'
23409 5' -61.3 NC_005259.1 + 6254 0.68 0.389246
Target:  5'- gGUCGAUaucccGCACCGCCG-CCg-CGCCu -3'
miRNA:   3'- gCGGCUGc----CGUGGCGGCuGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 13551 0.68 0.389246
Target:  5'- uCG-CGAugUGGC-CCGCCGACCc-CGCCc -3'
miRNA:   3'- -GCgGCU--GCCGuGGCGGCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 47377 0.68 0.389246
Target:  5'- uGCCGAacgcaCGcGCGCCGUugaGACCcUCGUCa -3'
miRNA:   3'- gCGGCU-----GC-CGUGGCGg--CUGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 43878 0.68 0.389246
Target:  5'- -aCCGGCaGCguuGCCGCCGACauugcccgCGCCg -3'
miRNA:   3'- gcGGCUGcCG---UGGCGGCUGgaa-----GCGG- -5'
23409 5' -61.3 NC_005259.1 + 35801 0.68 0.388406
Target:  5'- gCGCCucaacagGACGGUGCCGUaCGACCccgcauagcCGCCa -3'
miRNA:   3'- -GCGG-------CUGCCGUGGCG-GCUGGaa-------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 45627 0.68 0.38673
Target:  5'- cCGCCGGgccgggcagcgcgcCGGUGCCGCCGugaACac-CGCCg -3'
miRNA:   3'- -GCGGCU--------------GCCGUGGCGGC---UGgaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 56274 0.68 0.38673
Target:  5'- nCGCCGcccggcccguauCGGCACCagcagaccacgugGCCgGACCcucgUCGCCg -3'
miRNA:   3'- -GCGGCu-----------GCCGUGG-------------CGG-CUGGa---AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 2781 0.68 0.380901
Target:  5'- aGCCGAC-GCACC-UCGACUggUCGCa -3'
miRNA:   3'- gCGGCUGcCGUGGcGGCUGGa-AGCGg -5'
23409 5' -61.3 NC_005259.1 + 10999 0.68 0.380901
Target:  5'- uCGCa-ACGGCACCGC--GCCggacgCGCCg -3'
miRNA:   3'- -GCGgcUGCCGUGGCGgcUGGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 50881 0.68 0.380901
Target:  5'- uGCCGAUGGUcggaucaggaACCGCugCGugCgauagCGCCg -3'
miRNA:   3'- gCGGCUGCCG----------UGGCG--GCugGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 51491 0.68 0.380901
Target:  5'- cCGCCGGggauaGGUcgacGCCGCCGAUCUcgacgCGCg -3'
miRNA:   3'- -GCGGCUg----CCG----UGGCGGCUGGAa----GCGg -5'
23409 5' -61.3 NC_005259.1 + 13420 0.68 0.380901
Target:  5'- gGCCGG-GGuCGCCGCCGggGCCg-CGCUa -3'
miRNA:   3'- gCGGCUgCC-GUGGCGGC--UGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 59497 0.68 0.380073
Target:  5'- aGCCGAgagugucaccgccCGGCgaauuGCUGuuGGCCUuagCGCCg -3'
miRNA:   3'- gCGGCU-------------GCCG-----UGGCggCUGGAa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 37718 0.68 0.372676
Target:  5'- uGCCaGACccgaGGCACCGCCG-CCgacgaGCUg -3'
miRNA:   3'- gCGG-CUG----CCGUGGCGGCuGGaag--CGG- -5'
23409 5' -61.3 NC_005259.1 + 61123 0.68 0.372676
Target:  5'- aGCCGAgcaCGGUGCCGUucuCGAUCcgUGCCg -3'
miRNA:   3'- gCGGCU---GCCGUGGCG---GCUGGaaGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.