miRNA display CGI


Results 101 - 120 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 61123 0.68 0.372676
Target:  5'- aGCCGAgcaCGGUGCCGUucuCGAUCcgUGCCg -3'
miRNA:   3'- gCGGCU---GCCGUGGCG---GCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 38971 0.69 0.364573
Target:  5'- uGCaCGAUGGCAUCGCgGAuacCCUgcccaGCCu -3'
miRNA:   3'- gCG-GCUGCCGUGGCGgCU---GGAag---CGG- -5'
23409 5' -61.3 NC_005259.1 + 43817 0.69 0.356593
Target:  5'- uGCCGGgcGUACCGCCGgacacagggccGCCgcUCGCCa -3'
miRNA:   3'- gCGGCUgcCGUGGCGGC-----------UGGa-AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 37221 0.69 0.356593
Target:  5'- nCGCCGcCGGgG-CGCUGGCCcgUGCCg -3'
miRNA:   3'- -GCGGCuGCCgUgGCGGCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 737 0.69 0.356593
Target:  5'- -aCCGGCGGUGCCuacGCCG-CCggUGCCu -3'
miRNA:   3'- gcGGCUGCCGUGG---CGGCuGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 55102 0.69 0.348736
Target:  5'- uGCCGAUGGCGgCGaaaaaugcaCCGGCUgccgUGCCg -3'
miRNA:   3'- gCGGCUGCCGUgGC---------GGCUGGaa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 9157 0.69 0.348736
Target:  5'- cCGUCGACGGCauGCCGgUGGCa---GCCg -3'
miRNA:   3'- -GCGGCUGCCG--UGGCgGCUGgaagCGG- -5'
23409 5' -61.3 NC_005259.1 + 63120 0.69 0.348736
Target:  5'- cCGUCGAgGGUggugaggucguaGCCGCUGuCC-UCGCCc -3'
miRNA:   3'- -GCGGCUgCCG------------UGGCGGCuGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 20650 0.69 0.348736
Target:  5'- aCGuUCGGCGGCACCGg-GGCCgaggaCGCCa -3'
miRNA:   3'- -GC-GGCUGCCGUGGCggCUGGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 18488 0.69 0.348736
Target:  5'- aCGCCGACGaGCuacGCCGaCGACCUcaGCg -3'
miRNA:   3'- -GCGGCUGC-CG---UGGCgGCUGGAagCGg -5'
23409 5' -61.3 NC_005259.1 + 34467 0.69 0.344081
Target:  5'- uCGCUGAUGaGCAgcuugguggugucccCCGCCGACgCgacgacgaugUCGCCg -3'
miRNA:   3'- -GCGGCUGC-CGU---------------GGCGGCUG-Ga---------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 60126 0.69 0.341003
Target:  5'- -aUCGGCGGCcucgucCUGCgCGGCCUUgGCCg -3'
miRNA:   3'- gcGGCUGCCGu-----GGCG-GCUGGAAgCGG- -5'
23409 5' -61.3 NC_005259.1 + 24116 0.69 0.341003
Target:  5'- gGaCCgGGCGGggacuacacCGCCGCCGcCCUgcUCGCCg -3'
miRNA:   3'- gC-GG-CUGCC---------GUGGCGGCuGGA--AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 11863 0.69 0.341003
Target:  5'- cCGUCGGCGaacGUgACCGCCGcACCgucccaaUCGCCg -3'
miRNA:   3'- -GCGGCUGC---CG-UGGCGGC-UGGa------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 2195 0.69 0.341003
Target:  5'- gGCCGcuACGGCaaggugcugcgcACCGagcgcCCGGCCU-CGCCa -3'
miRNA:   3'- gCGGC--UGCCG------------UGGC-----GGCUGGAaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 36631 0.69 0.332641
Target:  5'- gCGCCGcccgcaaGGCccgcgaucagcgaGCCGCCG-CCcUCGCCg -3'
miRNA:   3'- -GCGGCug-----CCG-------------UGGCGGCuGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 29360 0.69 0.328891
Target:  5'- cCGCCGucgaGGCAcccgucgaggucuacCCGCCGACCUaCaCCg -3'
miRNA:   3'- -GCGGCug--CCGU---------------GGCGGCUGGAaGcGG- -5'
23409 5' -61.3 NC_005259.1 + 19870 0.69 0.325913
Target:  5'- gCGcCCGcCGGgAUCGCCGACgCcgCGCCc -3'
miRNA:   3'- -GC-GGCuGCCgUGGCGGCUG-GaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 58690 0.69 0.325913
Target:  5'- uCGCgGGguCGGCucgucgccGCCGCCGucACCaUCGCCg -3'
miRNA:   3'- -GCGgCU--GCCG--------UGGCGGC--UGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 32989 0.69 0.325913
Target:  5'- uGCCGAgGGUGCCGCCacGCCcgaugUCGgCa -3'
miRNA:   3'- gCGGCUgCCGUGGCGGc-UGGa----AGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.