miRNA display CGI


Results 121 - 140 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 31563 0.69 0.325913
Target:  5'- uGCCG-CuGCACCGCgccUGAUCgUCGCCa -3'
miRNA:   3'- gCGGCuGcCGUGGCG---GCUGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 28964 0.69 0.325913
Target:  5'- uCGCCGAgguCGGUGCCGa-GGCCgcgagCGCCc -3'
miRNA:   3'- -GCGGCU---GCCGUGGCggCUGGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 3137 0.69 0.318555
Target:  5'- aGCgGACGGCACCGCCcguggGACUacacggugaUGCCc -3'
miRNA:   3'- gCGgCUGCCGUGGCGG-----CUGGaa-------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 45905 0.69 0.318555
Target:  5'- gGUCGGCGGgCACCGCUgguaGACCgaggcUCuGCCc -3'
miRNA:   3'- gCGGCUGCC-GUGGCGG----CUGGa----AG-CGG- -5'
23409 5' -61.3 NC_005259.1 + 46950 0.7 0.314201
Target:  5'- cCGCCGACcgcguugagcuuguuGGCcacGCCGCCGAUgaUCggGCCg -3'
miRNA:   3'- -GCGGCUG---------------CCG---UGGCGGCUGgaAG--CGG- -5'
23409 5' -61.3 NC_005259.1 + 52135 0.7 0.311324
Target:  5'- cCGCCGucCGGCACCucGCCGagGCaggcagCGCCg -3'
miRNA:   3'- -GCGGCu-GCCGUGG--CGGC--UGgaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 31246 0.7 0.311324
Target:  5'- gGCgCGGCGGUGCCGCC--CCacaCGCCg -3'
miRNA:   3'- gCG-GCUGCCGUGGCGGcuGGaa-GCGG- -5'
23409 5' -61.3 NC_005259.1 + 20457 0.7 0.311324
Target:  5'- aGCCGGggUGGCucggaugaccGCCGUCGACCUcgacacCGCCc -3'
miRNA:   3'- gCGGCU--GCCG----------UGGCGGCUGGAa-----GCGG- -5'
23409 5' -61.3 NC_005259.1 + 7425 0.7 0.304217
Target:  5'- cCGUCGGCGGUgcccgcGCCGCaUGGCag-CGCCg -3'
miRNA:   3'- -GCGGCUGCCG------UGGCG-GCUGgaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 63170 0.7 0.304217
Target:  5'- cCGCCG-CaGCGCCGCCGAggugaucgcaccCCggucgugCGCCu -3'
miRNA:   3'- -GCGGCuGcCGUGGCGGCU------------GGaa-----GCGG- -5'
23409 5' -61.3 NC_005259.1 + 8329 0.7 0.30211
Target:  5'- uGCCGACGGCgaucagccggucacGCUGCUG-CCgguaUCGCUc -3'
miRNA:   3'- gCGGCUGCCG--------------UGGCGGCuGGa---AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 48398 0.7 0.297236
Target:  5'- cCGCCGACGccCGCCGUCGAgucaCCgcgacCGCCa -3'
miRNA:   3'- -GCGGCUGCc-GUGGCGGCU----GGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 67160 0.7 0.297236
Target:  5'- uGUCGAUGGUggcggccauGCCGCCGaugaugcccGCCUcgucucccUCGCCg -3'
miRNA:   3'- gCGGCUGCCG---------UGGCGGC---------UGGA--------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 32367 0.7 0.297236
Target:  5'- cCGCCGuguaggGCgGGCACUGCCcGCCgUCGCg -3'
miRNA:   3'- -GCGGC------UG-CCGUGGCGGcUGGaAGCGg -5'
23409 5' -61.3 NC_005259.1 + 25947 0.7 0.295166
Target:  5'- aCGCCGGugccCGGC-CCGCCGAcgccugcgaugagaCCgggcagCGCCg -3'
miRNA:   3'- -GCGGCU----GCCGuGGCGGCU--------------GGaa----GCGG- -5'
23409 5' -61.3 NC_005259.1 + 14349 0.7 0.293108
Target:  5'- cCGCCGACGcCAucaacucacgugucuCCGCUGAUCUcgucaccgagcUCGCCg -3'
miRNA:   3'- -GCGGCUGCcGU---------------GGCGGCUGGA-----------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 35456 0.7 0.29038
Target:  5'- gCGCCcacCGGCACCGCCaGCac-CGCCc -3'
miRNA:   3'- -GCGGcu-GCCGUGGCGGcUGgaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 10664 0.7 0.29038
Target:  5'- gCGCCuugagGAUGGuCugCGCCG-CCUcuuugUCGCCg -3'
miRNA:   3'- -GCGG-----CUGCC-GugGCGGCuGGA-----AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 26039 0.7 0.283649
Target:  5'- gGCCaGCaGCGCCGCCGgguuggccauGCCgcCGCCg -3'
miRNA:   3'- gCGGcUGcCGUGGCGGC----------UGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 17121 0.7 0.283649
Target:  5'- gCGcCCGAUuccaaGGCAcCCGUCGACCUgCGCa -3'
miRNA:   3'- -GC-GGCUG-----CCGU-GGCGGCUGGAaGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.