miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 7425 0.7 0.304217
Target:  5'- cCGUCGGCGGUgcccgcGCCGCaUGGCag-CGCCg -3'
miRNA:   3'- -GCGGCUGCCG------UGGCG-GCUGgaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 7901 0.67 0.450882
Target:  5'- cCGCCGAUaGcGCACCaccuuGCCGcCCUUgGUCu -3'
miRNA:   3'- -GCGGCUG-C-CGUGG-----CGGCuGGAAgCGG- -5'
23409 5' -61.3 NC_005259.1 + 8056 0.67 0.422026
Target:  5'- -aCCGcCGGuCGCCGCCGACaucgagaucgUGCCg -3'
miRNA:   3'- gcGGCuGCC-GUGGCGGCUGgaa-------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 8329 0.7 0.30211
Target:  5'- uGCCGACGGCgaucagccggucacGCUGCUG-CCgguaUCGCUc -3'
miRNA:   3'- gCGGCUGCCG--------------UGGCGGCuGGa---AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 8567 0.67 0.469457
Target:  5'- gCGCCG-CaGCACCGCC-ACCgcccaCGCa -3'
miRNA:   3'- -GCGGCuGcCGUGGCGGcUGGaa---GCGg -5'
23409 5' -61.3 NC_005259.1 + 8834 0.73 0.204053
Target:  5'- aGuuGACGcGCugCGCCGACCaccacagcgugccCGCCg -3'
miRNA:   3'- gCggCUGC-CGugGCGGCUGGaa-----------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 8994 0.66 0.527352
Target:  5'- gCGgCGACGGCA--GCCG-CC-UCGUCa -3'
miRNA:   3'- -GCgGCUGCCGUggCGGCuGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 9157 0.69 0.348736
Target:  5'- cCGUCGACGGCauGCCGgUGGCa---GCCg -3'
miRNA:   3'- -GCGGCUGCCG--UGGCgGCUGgaagCGG- -5'
23409 5' -61.3 NC_005259.1 + 9210 0.66 0.507726
Target:  5'- gGCCGGauCGaGCACCGCUgcggucuuGAUCUUCaagggGCCg -3'
miRNA:   3'- gCGGCU--GC-CGUGGCGG--------CUGGAAG-----CGG- -5'
23409 5' -61.3 NC_005259.1 + 9531 0.66 0.517502
Target:  5'- cCGCCGcCGGguCACCGgagagcugcCCGGCCU-CGaCCg -3'
miRNA:   3'- -GCGGCuGCC--GUGGC---------GGCUGGAaGC-GG- -5'
23409 5' -61.3 NC_005259.1 + 9698 0.67 0.450882
Target:  5'- uCGCCGcucACugGGCACCGUCcucgGGCCggucgagcUCGCCg -3'
miRNA:   3'- -GCGGC---UG--CCGUGGCGG----CUGGa-------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 10664 0.7 0.29038
Target:  5'- gCGCCuugagGAUGGuCugCGCCG-CCUcuuugUCGCCg -3'
miRNA:   3'- -GCGG-----CUGCC-GugGCGGCuGGA-----AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 10999 0.68 0.380901
Target:  5'- uCGCa-ACGGCACCGC--GCCggacgCGCCg -3'
miRNA:   3'- -GCGgcUGCCGUGGCGgcUGGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 11061 0.66 0.527352
Target:  5'- uGCCGAuCGGCucagcguggaaGCCGUacggcuCGACCU-CGCa -3'
miRNA:   3'- gCGGCU-GCCG-----------UGGCG------GCUGGAaGCGg -5'
23409 5' -61.3 NC_005259.1 + 11863 0.69 0.341003
Target:  5'- cCGUCGGCGaacGUgACCGCCGcACCgucccaaUCGCCg -3'
miRNA:   3'- -GCGGCUGC---CG-UGGCGGC-UGGa------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 12160 0.81 0.054372
Target:  5'- cCGCCGACGGCACCGCCcucggucgaACCU--GCCg -3'
miRNA:   3'- -GCGGCUGCCGUGGCGGc--------UGGAagCGG- -5'
23409 5' -61.3 NC_005259.1 + 12316 0.68 0.39771
Target:  5'- uGUCGGUGcGCACCGCCGccagcucacgcACCgcCGCCu -3'
miRNA:   3'- gCGGCUGC-CGUGGCGGC-----------UGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 12537 0.68 0.39771
Target:  5'- aGCCGAgcgagccccaCGGCAUUGCCGgggugGCC--CGCCa -3'
miRNA:   3'- gCGGCU----------GCCGUGGCGGC-----UGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 13420 0.68 0.380901
Target:  5'- gGCCGG-GGuCGCCGCCGggGCCg-CGCUa -3'
miRNA:   3'- gCGGCUgCC-GUGGCGGC--UGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 13551 0.68 0.389246
Target:  5'- uCG-CGAugUGGC-CCGCCGACCc-CGCCc -3'
miRNA:   3'- -GCgGCU--GCCGuGGCGGCUGGaaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.