miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 24861 0.66 0.516521
Target:  5'- aCGCCGA-GGC-CCGCCucgcucuGACCgcuaucgagUCaGCCg -3'
miRNA:   3'- -GCGGCUgCCGuGGCGG-------CUGGa--------AG-CGG- -5'
23409 5' -61.3 NC_005259.1 + 25947 0.7 0.295166
Target:  5'- aCGCCGGugccCGGC-CCGCCGAcgccugcgaugagaCCgggcagCGCCg -3'
miRNA:   3'- -GCGGCU----GCCGuGGCGGCU--------------GGaa----GCGG- -5'
23409 5' -61.3 NC_005259.1 + 26039 0.7 0.283649
Target:  5'- gGCCaGCaGCGCCGCCGgguuggccauGCCgcCGCCg -3'
miRNA:   3'- gCGGcUGcCGUGGCGGC----------UGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 26094 0.71 0.251838
Target:  5'- cCGCCGAgaagaccccCGaGCagACCGCCGccGCCggUCGCCg -3'
miRNA:   3'- -GCGGCU---------GC-CG--UGGCGGC--UGGa-AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 26412 0.72 0.234198
Target:  5'- gGCgCGGCGGUGCCGCCGuagaaCgcacCGCCg -3'
miRNA:   3'- gCG-GCUGCCGUGGCGGCug---Gaa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 26778 0.67 0.44084
Target:  5'- cCGCCGGugccucggaacacCaGCGCCGCCGcCCgguUgGCCg -3'
miRNA:   3'- -GCGGCU-------------GcCGUGGCGGCuGGa--AgCGG- -5'
23409 5' -61.3 NC_005259.1 + 28133 0.67 0.441747
Target:  5'- uGCCGACguaGGCgaugaGCUGcCCGGCCUcgacgCGCUg -3'
miRNA:   3'- gCGGCUG---CCG-----UGGC-GGCUGGAa----GCGG- -5'
23409 5' -61.3 NC_005259.1 + 28275 0.67 0.469457
Target:  5'- -aCCGuCGGCuCUGCCGAUgUagGCCa -3'
miRNA:   3'- gcGGCuGCCGuGGCGGCUGgAagCGG- -5'
23409 5' -61.3 NC_005259.1 + 28738 0.66 0.517502
Target:  5'- gGCCGAgGGuUACgCGCCcgagcgugaGAUCgUCGCCg -3'
miRNA:   3'- gCGGCUgCC-GUG-GCGG---------CUGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 28777 0.71 0.23996
Target:  5'- uGCCGACgaGGUAcCCGCCGGuCgCUaCGCCa -3'
miRNA:   3'- gCGGCUG--CCGU-GGCGGCU-G-GAaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 28964 0.69 0.325913
Target:  5'- uCGCCGAgguCGGUGCCGa-GGCCgcgagCGCCc -3'
miRNA:   3'- -GCGGCU---GCCGUGGCggCUGGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 29056 0.68 0.406291
Target:  5'- aGCCGcgagcGCGGUAUCGgcCCGAUCUgCGCUg -3'
miRNA:   3'- gCGGC-----UGCCGUGGC--GGCUGGAaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 29360 0.69 0.328891
Target:  5'- cCGCCGucgaGGCAcccgucgaggucuacCCGCCGACCUaCaCCg -3'
miRNA:   3'- -GCGGCug--CCGU---------------GGCGGCUGGAaGcGG- -5'
23409 5' -61.3 NC_005259.1 + 29679 0.68 0.39771
Target:  5'- uGCCGGacGCGCCGCaaucgaGACCgaUGCCg -3'
miRNA:   3'- gCGGCUgcCGUGGCGg-----CUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 30126 0.66 0.514561
Target:  5'- uGCCGucCGGCugCGauaccucgggcagcUCGACCgggcCGCCu -3'
miRNA:   3'- gCGGCu-GCCGugGC--------------GGCUGGaa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 30770 0.77 0.106248
Target:  5'- aCGCCGGUGGCACCGCUG-CCguugUUCGCg -3'
miRNA:   3'- -GCGGCUGCCGUGGCGGCuGG----AAGCGg -5'
23409 5' -61.3 NC_005259.1 + 31246 0.7 0.311324
Target:  5'- gGCgCGGCGGUGCCGCC--CCacaCGCCg -3'
miRNA:   3'- gCG-GCUGCCGUGGCGGcuGGaa-GCGG- -5'
23409 5' -61.3 NC_005259.1 + 31563 0.69 0.325913
Target:  5'- uGCCG-CuGCACCGCgccUGAUCgUCGCCa -3'
miRNA:   3'- gCGGCuGcCGUGGCG---GCUGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 31768 0.66 0.488415
Target:  5'- cCGCCccgucaucGAUGuGCugCGCCuuGACCgcgUCGUCa -3'
miRNA:   3'- -GCGG--------CUGC-CGugGCGG--CUGGa--AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 32367 0.7 0.297236
Target:  5'- cCGCCGuguaggGCgGGCACUGCCcGCCgUCGCg -3'
miRNA:   3'- -GCGGC------UG-CCGUGGCGGcUGGaAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.