miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 32989 0.69 0.325913
Target:  5'- uGCCGAgGGUGCCGCCacGCCcgaugUCGgCa -3'
miRNA:   3'- gCGGCUgCCGUGGCGGc-UGGa----AGCgG- -5'
23409 5' -61.3 NC_005259.1 + 33122 0.66 0.47889
Target:  5'- gGCCacGCGGCAgCCGCCGcGCgUgaucUUGCCg -3'
miRNA:   3'- gCGGc-UGCCGU-GGCGGC-UGgA----AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 33228 0.67 0.432718
Target:  5'- cCGCCGcCGGuCACCGCguacgugccaGAUCUgcccgcagCGCCg -3'
miRNA:   3'- -GCGGCuGCC-GUGGCGg---------CUGGAa-------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 33531 0.66 0.507726
Target:  5'- gGUCGACccacGC-CUGCUGAUCgUCGCCg -3'
miRNA:   3'- gCGGCUGc---CGuGGCGGCUGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 34222 0.67 0.46012
Target:  5'- uGUCccCGGCGCUGCCGGUCUU-GCCg -3'
miRNA:   3'- gCGGcuGCCGUGGCGGCUGGAAgCGG- -5'
23409 5' -61.3 NC_005259.1 + 34467 0.69 0.344081
Target:  5'- uCGCUGAUGaGCAgcuugguggugucccCCGCCGACgCgacgacgaugUCGCCg -3'
miRNA:   3'- -GCGGCUGC-CGU---------------GGCGGCUG-Ga---------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 34691 0.66 0.527352
Target:  5'- gCGCUG-CGGaugaUGCCGACCaUCuGCCg -3'
miRNA:   3'- -GCGGCuGCCgug-GCGGCUGGaAG-CGG- -5'
23409 5' -61.3 NC_005259.1 + 35259 0.66 0.47889
Target:  5'- gCGuuGuuCGcGC-CCGCCGcGCCggggUCGCCg -3'
miRNA:   3'- -GCggCu-GC-CGuGGCGGC-UGGa---AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 35456 0.7 0.29038
Target:  5'- gCGCCcacCGGCACCGCCaGCac-CGCCc -3'
miRNA:   3'- -GCGGcu-GCCGUGGCGGcUGgaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 35520 0.77 0.093076
Target:  5'- cCGCCGcCGGgcaCACCGCCcGCCgUCGCCg -3'
miRNA:   3'- -GCGGCuGCC---GUGGCGGcUGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 35553 0.66 0.527352
Target:  5'- cCGcCCGAUGaCuuGCCGCCGACC---GCCg -3'
miRNA:   3'- -GC-GGCUGCcG--UGGCGGCUGGaagCGG- -5'
23409 5' -61.3 NC_005259.1 + 35712 0.66 0.507726
Target:  5'- uCGCUGACgaGGUAuCCGCCcgacGACCcggCGCUg -3'
miRNA:   3'- -GCGGCUG--CCGU-GGCGG----CUGGaa-GCGG- -5'
23409 5' -61.3 NC_005259.1 + 35801 0.68 0.388406
Target:  5'- gCGCCucaacagGACGGUGCCGUaCGACCccgcauagcCGCCa -3'
miRNA:   3'- -GCGG-------CUGCCGUGGCG-GCUGGaa-------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 36210 0.68 0.39771
Target:  5'- uGCuCGACaGCGCgaUGCCGAgcaCCUUgGCCa -3'
miRNA:   3'- gCG-GCUGcCGUG--GCGGCU---GGAAgCGG- -5'
23409 5' -61.3 NC_005259.1 + 36631 0.69 0.332641
Target:  5'- gCGCCGcccgcaaGGCccgcgaucagcgaGCCGCCG-CCcUCGCCg -3'
miRNA:   3'- -GCGGCug-----CCG-------------UGGCGGCuGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 36704 0.74 0.161012
Target:  5'- cCGCCGAUGaGCucguGCCGCuCGACC--CGCCg -3'
miRNA:   3'- -GCGGCUGC-CG----UGGCG-GCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 36796 0.67 0.432718
Target:  5'- cCGCuCGcguCGGCAUUGuuGACCggCGCg -3'
miRNA:   3'- -GCG-GCu--GCCGUGGCggCUGGaaGCGg -5'
23409 5' -61.3 NC_005259.1 + 36865 0.74 0.173777
Target:  5'- gCGCCGuugcUGGCACCGCCcgcGCCgacgaCGCCg -3'
miRNA:   3'- -GCGGCu---GCCGUGGCGGc--UGGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 36928 0.66 0.516521
Target:  5'- uGCCGACGGUgaguguuGCUGUC-ACCggggUGCCc -3'
miRNA:   3'- gCGGCUGCCG-------UGGCGGcUGGaa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 36969 0.68 0.414987
Target:  5'- cCGCCucGGCccGCACCGCCGAacgUCGCa -3'
miRNA:   3'- -GCGG--CUGc-CGUGGCGGCUggaAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.