miRNA display CGI


Results 101 - 120 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 37179 0.71 0.268636
Target:  5'- aCGCCGcgcgaggacgagcuGCGGCccuuGCCGCC-ACCgcCGCCg -3'
miRNA:   3'- -GCGGC--------------UGCCG----UGGCGGcUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 37221 0.69 0.356593
Target:  5'- nCGCCGcCGGgG-CGCUGGCCcgUGCCg -3'
miRNA:   3'- -GCGGCuGCCgUgGCGGCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 37377 0.77 0.093076
Target:  5'- aCGCCcuCGGCACCGCCcGCCg-CGCCg -3'
miRNA:   3'- -GCGGcuGCCGUGGCGGcUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 37568 0.66 0.488415
Target:  5'- uGUCGACuGC-UCGCCG-CCcgCGCCg -3'
miRNA:   3'- gCGGCUGcCGuGGCGGCuGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 37641 0.72 0.212306
Target:  5'- uGcCCGAUGaccGCACCGCCG-CCgcCGCCg -3'
miRNA:   3'- gC-GGCUGC---CGUGGCGGCuGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 37718 0.68 0.372676
Target:  5'- uGCCaGACccgaGGCACCGCCG-CCgacgaGCUg -3'
miRNA:   3'- gCGG-CUG----CCGUGGCGGCuGGaag--CGG- -5'
23409 5' -61.3 NC_005259.1 + 38640 0.67 0.469457
Target:  5'- aCGCCGAguUGGCGaacUCGCCGAaaucgaccaCC-UCGCUg -3'
miRNA:   3'- -GCGGCU--GCCGU---GGCGGCU---------GGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 38971 0.69 0.364573
Target:  5'- uGCaCGAUGGCAUCGCgGAuacCCUgcccaGCCu -3'
miRNA:   3'- gCG-GCUGCCGUGGCGgCU---GGAag---CGG- -5'
23409 5' -61.3 NC_005259.1 + 39154 0.67 0.450882
Target:  5'- uCGCCGACGuugaaACCGCCGAaca-CGUCg -3'
miRNA:   3'- -GCGGCUGCcg---UGGCGGCUggaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 41724 0.66 0.517502
Target:  5'- -aCCGGCGGCggggaggacACCGCCucgacacgcucGACCU-CGCa -3'
miRNA:   3'- gcGGCUGCCG---------UGGCGG-----------CUGGAaGCGg -5'
23409 5' -61.3 NC_005259.1 + 42216 0.67 0.441747
Target:  5'- uGCCcGCcGCGCCGCCGuCCccgGCCa -3'
miRNA:   3'- gCGGcUGcCGUGGCGGCuGGaagCGG- -5'
23409 5' -61.3 NC_005259.1 + 42943 0.72 0.205579
Target:  5'- uCGCCGugGGCgagGCCGCCGuugucgaacgggauGCCggggaucaucgUUGCCg -3'
miRNA:   3'- -GCGGCugCCG---UGGCGGC--------------UGGa----------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 43023 0.66 0.527352
Target:  5'- -aCCGGCGauGCCGCCGAgCaggcCGCCg -3'
miRNA:   3'- gcGGCUGCcgUGGCGGCUgGaa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 43208 0.67 0.469457
Target:  5'- uGUCGAC-GC-CCGCCuGACC--CGCCg -3'
miRNA:   3'- gCGGCUGcCGuGGCGG-CUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 43244 0.66 0.498029
Target:  5'- aGCUGACGauGCCGCCcgcGCCgggUGCCu -3'
miRNA:   3'- gCGGCUGCcgUGGCGGc--UGGaa-GCGG- -5'
23409 5' -61.3 NC_005259.1 + 43295 0.73 0.195591
Target:  5'- cCGCCGACgcgcccgccugaauGGCugCGuuGGCCacCGCCu -3'
miRNA:   3'- -GCGGCUG--------------CCGugGCggCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 43657 0.76 0.114973
Target:  5'- gCGCCGACGGUgucGuuGCCGAUCacacCGCCg -3'
miRNA:   3'- -GCGGCUGCCG---UggCGGCUGGaa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 43727 0.67 0.450882
Target:  5'- aGUCGAUGGCgGCCauGCCG-CCga-GCCg -3'
miRNA:   3'- gCGGCUGCCG-UGG--CGGCuGGaagCGG- -5'
23409 5' -61.3 NC_005259.1 + 43817 0.69 0.356593
Target:  5'- uGCCGGgcGUACCGCCGgacacagggccGCCgcUCGCCa -3'
miRNA:   3'- gCGGCUgcCGUGGCGGC-----------UGGa-AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 43878 0.68 0.389246
Target:  5'- -aCCGGCaGCguuGCCGCCGACauugcccgCGCCg -3'
miRNA:   3'- gcGGCUGcCG---UGGCGGCUGgaa-----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.