miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 51491 0.68 0.380901
Target:  5'- cCGCCGGggauaGGUcgacGCCGCCGAUCUcgacgCGCg -3'
miRNA:   3'- -GCGGCUg----CCG----UGGCGGCUGGAa----GCGg -5'
23409 5' -61.3 NC_005259.1 + 50881 0.68 0.380901
Target:  5'- uGCCGAUGGUcggaucaggaACCGCugCGugCgauagCGCCg -3'
miRNA:   3'- gCGGCUGCCG----------UGGCG--GCugGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 50686 0.66 0.47889
Target:  5'- uGCCGACgaGGCGCUGCuCG-UCgUCGCg -3'
miRNA:   3'- gCGGCUG--CCGUGGCG-GCuGGaAGCGg -5'
23409 5' -61.3 NC_005259.1 + 50395 0.66 0.517502
Target:  5'- uGUCG-CGGC-UCGCCGAgCg-CGCCg -3'
miRNA:   3'- gCGGCuGCCGuGGCGGCUgGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 49632 0.66 0.498029
Target:  5'- -aUCGGCGGCAgCCGCgucggcgauggCGGCCUcgauacgCGCCu -3'
miRNA:   3'- gcGGCUGCCGU-GGCG-----------GCUGGAa------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 48606 0.72 0.217608
Target:  5'- gCGCgGGCGcUACCGCCGugCgcacugccUCGCCg -3'
miRNA:   3'- -GCGgCUGCcGUGGCGGCugGa-------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 48511 0.72 0.228553
Target:  5'- gGCCGcgacuuGCcGCACUGCCGACUUcucggcgcugUCGCCg -3'
miRNA:   3'- gCGGC------UGcCGUGGCGGCUGGA----------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 48398 0.7 0.297236
Target:  5'- cCGCCGACGccCGCCGUCGAgucaCCgcgacCGCCa -3'
miRNA:   3'- -GCGGCUGCc-GUGGCGGCU----GGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 47943 0.72 0.212306
Target:  5'- aGCCGAugaCGGCGgUGCCGaugGCCgccgCGCCg -3'
miRNA:   3'- gCGGCU---GCCGUgGCGGC---UGGaa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 47377 0.68 0.389246
Target:  5'- uGCCGAacgcaCGcGCGCCGUugaGACCcUCGUCa -3'
miRNA:   3'- gCGGCU-----GC-CGUGGCGg--CUGGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 47298 0.68 0.39771
Target:  5'- uCGCCGGacagcgaccccuUGGCcugACCGgCGGCCUUgGUCa -3'
miRNA:   3'- -GCGGCU------------GCCG---UGGCgGCUGGAAgCGG- -5'
23409 5' -61.3 NC_005259.1 + 47185 0.73 0.187437
Target:  5'- gGUCGGCGGUGCCGUCGGCgaagaacUUGCCg -3'
miRNA:   3'- gCGGCUGCCGUGGCGGCUGga-----AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 46950 0.7 0.314201
Target:  5'- cCGCCGACcgcguugagcuuguuGGCcacGCCGCCGAUgaUCggGCCg -3'
miRNA:   3'- -GCGGCUG---------------CCG---UGGCGGCUGgaAG--CGG- -5'
23409 5' -61.3 NC_005259.1 + 46908 0.77 0.098148
Target:  5'- cCGCCGagcaguccGCGuGCGCCGCCGAgCUUgccCGCCg -3'
miRNA:   3'- -GCGGC--------UGC-CGUGGCGGCUgGAA---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 46745 0.77 0.100781
Target:  5'- uGCCcgcGAUGGCugCGCCGAcaCCUgCGCCg -3'
miRNA:   3'- gCGG---CUGCCGugGCGGCU--GGAaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 46555 0.72 0.212306
Target:  5'- uCGCCGACcGCGCCuauggucgcggcGUCGACCg-CGCCg -3'
miRNA:   3'- -GCGGCUGcCGUGG------------CGGCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 46362 0.71 0.248224
Target:  5'- gGCCgcGAUGGCACCGCCcGGCCccaucucacgcaGCCg -3'
miRNA:   3'- gCGG--CUGCCGUGGCGG-CUGGaag---------CGG- -5'
23409 5' -61.3 NC_005259.1 + 45905 0.69 0.318555
Target:  5'- gGUCGGCGGgCACCGCUgguaGACCgaggcUCuGCCc -3'
miRNA:   3'- gCGGCUGCC-GUGGCGG----CUGGa----AG-CGG- -5'
23409 5' -61.3 NC_005259.1 + 45627 0.68 0.38673
Target:  5'- cCGCCGGgccgggcagcgcgcCGGUGCCGCCGugaACac-CGCCg -3'
miRNA:   3'- -GCGGCU--------------GCCGUGGCGGC---UGgaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 45468 0.66 0.498029
Target:  5'- uGCCGAacgGGCcgagcuucugGCCGCUgguGGCCUuggUCGCUg -3'
miRNA:   3'- gCGGCUg--CCG----------UGGCGG---CUGGA---AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.