Results 61 - 80 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23409 | 5' | -61.3 | NC_005259.1 | + | 45413 | 0.75 | 0.149097 |
Target: 5'- gCGCUGAUGGcCGCCGCCGcuGCCUcguagGCCg -3' miRNA: 3'- -GCGGCUGCC-GUGGCGGC--UGGAag---CGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 45314 | 0.76 | 0.111993 |
Target: 5'- aCGCCGA-GGcCGCCGCCGaacugcgugGCCUgCGCCg -3' miRNA: 3'- -GCGGCUgCC-GUGGCGGC---------UGGAaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 44995 | 0.86 | 0.022011 |
Target: 5'- uGCCGA-GGCACCGCCGACCgccggggccgCGCCg -3' miRNA: 3'- gCGGCUgCCGUGGCGGCUGGaa--------GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 44637 | 0.7 | 0.283649 |
Target: 5'- gCGCCuuGAcCGGUGCCGCCGcCCgacucgaaCGCCa -3' miRNA: 3'- -GCGG--CU-GCCGUGGCGGCuGGaa------GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 44397 | 0.73 | 0.192197 |
Target: 5'- uCGCCGAgcacguCGGUGcCCGCCuGACCggcagCGCCg -3' miRNA: 3'- -GCGGCU------GCCGU-GGCGG-CUGGaa---GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 44332 | 0.66 | 0.52439 |
Target: 5'- gCGCCG-CGuaGCUGCCGGgCUuguuccacggcucgUUGCCg -3' miRNA: 3'- -GCGGCuGCcgUGGCGGCUgGA--------------AGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 43950 | 0.66 | 0.488415 |
Target: 5'- gCGUCGGCgaugggcggGGcCGCCGCCuGACCgagggcggUGCCg -3' miRNA: 3'- -GCGGCUG---------CC-GUGGCGG-CUGGaa------GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 43878 | 0.68 | 0.389246 |
Target: 5'- -aCCGGCaGCguuGCCGCCGACauugcccgCGCCg -3' miRNA: 3'- gcGGCUGcCG---UGGCGGCUGgaa-----GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 43817 | 0.69 | 0.356593 |
Target: 5'- uGCCGGgcGUACCGCCGgacacagggccGCCgcUCGCCa -3' miRNA: 3'- gCGGCUgcCGUGGCGGC-----------UGGa-AGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 43727 | 0.67 | 0.450882 |
Target: 5'- aGUCGAUGGCgGCCauGCCG-CCga-GCCg -3' miRNA: 3'- gCGGCUGCCG-UGG--CGGCuGGaagCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 43657 | 0.76 | 0.114973 |
Target: 5'- gCGCCGACGGUgucGuuGCCGAUCacacCGCCg -3' miRNA: 3'- -GCGGCUGCCG---UggCGGCUGGaa--GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 43295 | 0.73 | 0.195591 |
Target: 5'- cCGCCGACgcgcccgccugaauGGCugCGuuGGCCacCGCCu -3' miRNA: 3'- -GCGGCUG--------------CCGugGCggCUGGaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 43244 | 0.66 | 0.498029 |
Target: 5'- aGCUGACGauGCCGCCcgcGCCgggUGCCu -3' miRNA: 3'- gCGGCUGCcgUGGCGGc--UGGaa-GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 43208 | 0.67 | 0.469457 |
Target: 5'- uGUCGAC-GC-CCGCCuGACC--CGCCg -3' miRNA: 3'- gCGGCUGcCGuGGCGG-CUGGaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 43023 | 0.66 | 0.527352 |
Target: 5'- -aCCGGCGauGCCGCCGAgCaggcCGCCg -3' miRNA: 3'- gcGGCUGCcgUGGCGGCUgGaa--GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 42943 | 0.72 | 0.205579 |
Target: 5'- uCGCCGugGGCgagGCCGCCGuugucgaacgggauGCCggggaucaucgUUGCCg -3' miRNA: 3'- -GCGGCugCCG---UGGCGGC--------------UGGa----------AGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 42216 | 0.67 | 0.441747 |
Target: 5'- uGCCcGCcGCGCCGCCGuCCccgGCCa -3' miRNA: 3'- gCGGcUGcCGUGGCGGCuGGaagCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 41724 | 0.66 | 0.517502 |
Target: 5'- -aCCGGCGGCggggaggacACCGCCucgacacgcucGACCU-CGCa -3' miRNA: 3'- gcGGCUGCCG---------UGGCGG-----------CUGGAaGCGg -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 39154 | 0.67 | 0.450882 |
Target: 5'- uCGCCGACGuugaaACCGCCGAaca-CGUCg -3' miRNA: 3'- -GCGGCUGCcg---UGGCGGCUggaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 38971 | 0.69 | 0.364573 |
Target: 5'- uGCaCGAUGGCAUCGCgGAuacCCUgcccaGCCu -3' miRNA: 3'- gCG-GCUGCCGUGGCGgCU---GGAag---CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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