Results 81 - 100 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23409 | 5' | -61.3 | NC_005259.1 | + | 38640 | 0.67 | 0.469457 |
Target: 5'- aCGCCGAguUGGCGaacUCGCCGAaaucgaccaCC-UCGCUg -3' miRNA: 3'- -GCGGCU--GCCGU---GGCGGCU---------GGaAGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 37718 | 0.68 | 0.372676 |
Target: 5'- uGCCaGACccgaGGCACCGCCG-CCgacgaGCUg -3' miRNA: 3'- gCGG-CUG----CCGUGGCGGCuGGaag--CGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 37641 | 0.72 | 0.212306 |
Target: 5'- uGcCCGAUGaccGCACCGCCG-CCgcCGCCg -3' miRNA: 3'- gC-GGCUGC---CGUGGCGGCuGGaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 37568 | 0.66 | 0.488415 |
Target: 5'- uGUCGACuGC-UCGCCG-CCcgCGCCg -3' miRNA: 3'- gCGGCUGcCGuGGCGGCuGGaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 37377 | 0.77 | 0.093076 |
Target: 5'- aCGCCcuCGGCACCGCCcGCCg-CGCCg -3' miRNA: 3'- -GCGGcuGCCGUGGCGGcUGGaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 37221 | 0.69 | 0.356593 |
Target: 5'- nCGCCGcCGGgG-CGCUGGCCcgUGCCg -3' miRNA: 3'- -GCGGCuGCCgUgGCGGCUGGaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 37179 | 0.71 | 0.268636 |
Target: 5'- aCGCCGcgcgaggacgagcuGCGGCccuuGCCGCC-ACCgcCGCCg -3' miRNA: 3'- -GCGGC--------------UGCCG----UGGCGGcUGGaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 36969 | 0.68 | 0.414987 |
Target: 5'- cCGCCucGGCccGCACCGCCGAacgUCGCa -3' miRNA: 3'- -GCGG--CUGc-CGUGGCGGCUggaAGCGg -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 36928 | 0.66 | 0.516521 |
Target: 5'- uGCCGACGGUgaguguuGCUGUC-ACCggggUGCCc -3' miRNA: 3'- gCGGCUGCCG-------UGGCGGcUGGaa--GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 36865 | 0.74 | 0.173777 |
Target: 5'- gCGCCGuugcUGGCACCGCCcgcGCCgacgaCGCCg -3' miRNA: 3'- -GCGGCu---GCCGUGGCGGc--UGGaa---GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 36796 | 0.67 | 0.432718 |
Target: 5'- cCGCuCGcguCGGCAUUGuuGACCggCGCg -3' miRNA: 3'- -GCG-GCu--GCCGUGGCggCUGGaaGCGg -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 36704 | 0.74 | 0.161012 |
Target: 5'- cCGCCGAUGaGCucguGCCGCuCGACC--CGCCg -3' miRNA: 3'- -GCGGCUGC-CG----UGGCG-GCUGGaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 36631 | 0.69 | 0.332641 |
Target: 5'- gCGCCGcccgcaaGGCccgcgaucagcgaGCCGCCG-CCcUCGCCg -3' miRNA: 3'- -GCGGCug-----CCG-------------UGGCGGCuGGaAGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 36210 | 0.68 | 0.39771 |
Target: 5'- uGCuCGACaGCGCgaUGCCGAgcaCCUUgGCCa -3' miRNA: 3'- gCG-GCUGcCGUG--GCGGCU---GGAAgCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 35801 | 0.68 | 0.388406 |
Target: 5'- gCGCCucaacagGACGGUGCCGUaCGACCccgcauagcCGCCa -3' miRNA: 3'- -GCGG-------CUGCCGUGGCG-GCUGGaa-------GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 35712 | 0.66 | 0.507726 |
Target: 5'- uCGCUGACgaGGUAuCCGCCcgacGACCcggCGCUg -3' miRNA: 3'- -GCGGCUG--CCGU-GGCGG----CUGGaa-GCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 35553 | 0.66 | 0.527352 |
Target: 5'- cCGcCCGAUGaCuuGCCGCCGACC---GCCg -3' miRNA: 3'- -GC-GGCUGCcG--UGGCGGCUGGaagCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 35520 | 0.77 | 0.093076 |
Target: 5'- cCGCCGcCGGgcaCACCGCCcGCCgUCGCCg -3' miRNA: 3'- -GCGGCuGCC---GUGGCGGcUGGaAGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 35456 | 0.7 | 0.29038 |
Target: 5'- gCGCCcacCGGCACCGCCaGCac-CGCCc -3' miRNA: 3'- -GCGGcu-GCCGUGGCGGcUGgaaGCGG- -5' |
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23409 | 5' | -61.3 | NC_005259.1 | + | 35259 | 0.66 | 0.47889 |
Target: 5'- gCGuuGuuCGcGC-CCGCCGcGCCggggUCGCCg -3' miRNA: 3'- -GCggCu-GC-CGuGGCGGC-UGGa---AGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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