miRNA display CGI


Results 81 - 100 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 4359 0.71 0.270557
Target:  5'- gCGCCgGACGGCACgC-CCGugcCCUgcucaUCGCCa -3'
miRNA:   3'- -GCGG-CUGCCGUG-GcGGCu--GGA-----AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 53162 0.71 0.270557
Target:  5'- aCGCCGA-GGCcgaucucgccACCGCCGcCCgUCGCg -3'
miRNA:   3'- -GCGGCUgCCG----------UGGCGGCuGGaAGCGg -5'
23409 5' -61.3 NC_005259.1 + 56240 0.71 0.270557
Target:  5'- cCGCCGACcacguuGGgAUCGgCGGCCUugagCGCCg -3'
miRNA:   3'- -GCGGCUG------CCgUGGCgGCUGGAa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 24571 0.7 0.277041
Target:  5'- -cUCGugGGCACCGCaCGugCUcaaCGCUa -3'
miRNA:   3'- gcGGCugCCGUGGCG-GCugGAa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 44637 0.7 0.283649
Target:  5'- gCGCCuuGAcCGGUGCCGCCGcCCgacucgaaCGCCa -3'
miRNA:   3'- -GCGG--CU-GCCGUGGCGGCuGGaa------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 17121 0.7 0.283649
Target:  5'- gCGcCCGAUuccaaGGCAcCCGUCGACCUgCGCa -3'
miRNA:   3'- -GC-GGCUG-----CCGU-GGCGGCUGGAaGCGg -5'
23409 5' -61.3 NC_005259.1 + 26039 0.7 0.283649
Target:  5'- gGCCaGCaGCGCCGCCGgguuggccauGCCgcCGCCg -3'
miRNA:   3'- gCGGcUGcCGUGGCGGC----------UGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 46362 0.71 0.248224
Target:  5'- gGCCgcGAUGGCACCGCCcGGCCccaucucacgcaGCCg -3'
miRNA:   3'- gCGG--CUGCCGUGGCGG-CUGGaag---------CGG- -5'
23409 5' -61.3 NC_005259.1 + 28777 0.71 0.23996
Target:  5'- uGCCGACgaGGUAcCCGCCGGuCgCUaCGCCa -3'
miRNA:   3'- gCGGCUG--CCGU-GGCGGCU-G-GAaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 26412 0.72 0.234198
Target:  5'- gGCgCGGCGGUGCCGCCGuagaaCgcacCGCCg -3'
miRNA:   3'- gCG-GCUGCCGUGGCGGCug---Gaa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 43295 0.73 0.195591
Target:  5'- cCGCCGACgcgcccgccugaauGGCugCGuuGGCCacCGCCu -3'
miRNA:   3'- -GCGGCUG--------------CCGugGCggCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 8834 0.73 0.204053
Target:  5'- aGuuGACGcGCugCGCCGACCaccacagcgugccCGCCg -3'
miRNA:   3'- gCggCUGC-CGugGCGGCUGGaa-----------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 42943 0.72 0.205579
Target:  5'- uCGCCGugGGCgagGCCGCCGuugucgaacgggauGCCggggaucaucgUUGCCg -3'
miRNA:   3'- -GCGGCugCCG---UGGCGGC--------------UGGa----------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 47943 0.72 0.212306
Target:  5'- aGCCGAugaCGGCGgUGCCGaugGCCgccgCGCCg -3'
miRNA:   3'- gCGGCU---GCCGUgGCGGC---UGGaa--GCGG- -5'
23409 5' -61.3 NC_005259.1 + 37641 0.72 0.212306
Target:  5'- uGcCCGAUGaccGCACCGCCG-CCgcCGCCg -3'
miRNA:   3'- gC-GGCUGC---CGUGGCGGCuGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 46555 0.72 0.212306
Target:  5'- uCGCCGACcGCGCCuauggucgcggcGUCGACCg-CGCCg -3'
miRNA:   3'- -GCGGCUGcCGUGG------------CGGCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 48606 0.72 0.217608
Target:  5'- gCGCgGGCGcUACCGCCGugCgcacugccUCGCCg -3'
miRNA:   3'- -GCGgCUGCcGUGGCGGCugGa-------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 62952 0.72 0.217608
Target:  5'- uGCCG--GGCACCGCUGuCCUcgUCGUCu -3'
miRNA:   3'- gCGGCugCCGUGGCGGCuGGA--AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 48511 0.72 0.228553
Target:  5'- gGCCGcgacuuGCcGCACUGCCGACUUcucggcgcugUCGCCg -3'
miRNA:   3'- gCGGC------UGcCGUGGCGGCUGGA----------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 17314 0.72 0.228553
Target:  5'- aCGCCGAgCGGUACCccgaggguguGCCGGUCaacgUCGCCg -3'
miRNA:   3'- -GCGGCU-GCCGUGG----------CGGCUGGa---AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.