miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23409 5' -61.3 NC_005259.1 + 63387 0.8 0.060595
Target:  5'- uCGCCGAUGGCcCaCGCCGACCaauggUUGCCc -3'
miRNA:   3'- -GCGGCUGCCGuG-GCGGCUGGa----AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 23653 0.8 0.058978
Target:  5'- cCGCCGACGGCgacggcuggACCGCCGACCccgagcaggCGCa -3'
miRNA:   3'- -GCGGCUGCCG---------UGGCGGCUGGaa-------GCGg -5'
23409 5' -61.3 NC_005259.1 + 12160 0.81 0.054372
Target:  5'- cCGCCGACGGCACCGCCcucggucgaACCU--GCCg -3'
miRNA:   3'- -GCGGCUGCCGUGGCGGc--------UGGAagCGG- -5'
23409 5' -61.3 NC_005259.1 + 1811 0.84 0.028994
Target:  5'- gGCCGACGcgaGCAaucCCGCCGACCUgcUCGCCg -3'
miRNA:   3'- gCGGCUGC---CGU---GGCGGCUGGA--AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 15277 0.86 0.02326
Target:  5'- uCGCCGACGaGCaagcgaucuacACCGCCGACCU-CGCCg -3'
miRNA:   3'- -GCGGCUGC-CG-----------UGGCGGCUGGAaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 22668 0.76 0.118027
Target:  5'- uCGCCGACGcacugacCGCCGCCGAuuuccCCgccgUCGCCg -3'
miRNA:   3'- -GCGGCUGCc------GUGGCGGCU-----GGa---AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 6432 0.76 0.118027
Target:  5'- uCGCCGAuguCGGCACCGUCGcGCUgaucggcagcgUCGCCg -3'
miRNA:   3'- -GCGGCU---GCCGUGGCGGC-UGGa----------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 42943 0.72 0.205579
Target:  5'- uCGCCGugGGCgagGCCGCCGuugucgaacgggauGCCggggaucaucgUUGCCg -3'
miRNA:   3'- -GCGGCugCCG---UGGCGGC--------------UGGa----------AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 8834 0.73 0.204053
Target:  5'- aGuuGACGcGCugCGCCGACCaccacagcgugccCGCCg -3'
miRNA:   3'- gCggCUGC-CGugGCGGCUGGaa-----------GCGG- -5'
23409 5' -61.3 NC_005259.1 + 43295 0.73 0.195591
Target:  5'- cCGCCGACgcgcccgccugaauGGCugCGuuGGCCacCGCCu -3'
miRNA:   3'- -GCGGCUG--------------CCGugGCggCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 44397 0.73 0.192197
Target:  5'- uCGCCGAgcacguCGGUGcCCGCCuGACCggcagCGCCg -3'
miRNA:   3'- -GCGGCU------GCCGU-GGCGG-CUGGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 47185 0.73 0.187437
Target:  5'- gGUCGGCGGUGCCGUCGGCgaagaacUUGCCg -3'
miRNA:   3'- gCGGCUGCCGUGGCGGCUGga-----AGCGG- -5'
23409 5' -61.3 NC_005259.1 + 6956 0.73 0.182782
Target:  5'- cCGCCGACGGCAuccacacccUCGauGACCUaaCGCCg -3'
miRNA:   3'- -GCGGCUGCCGU---------GGCggCUGGAa-GCGG- -5'
23409 5' -61.3 NC_005259.1 + 36865 0.74 0.173777
Target:  5'- gCGCCGuugcUGGCACCGCCcgcGCCgacgaCGCCg -3'
miRNA:   3'- -GCGGCu---GCCGUGGCGGc--UGGaa---GCGG- -5'
23409 5' -61.3 NC_005259.1 + 67063 0.74 0.169425
Target:  5'- gCGCCGAUcucaagGGCcagcgugaCGCCGACCUUgGCCc -3'
miRNA:   3'- -GCGGCUG------CCGug------GCGGCUGGAAgCGG- -5'
23409 5' -61.3 NC_005259.1 + 22591 0.74 0.169425
Target:  5'- gGUCGACGcGaucaagcugcaCGCCGCCGACCgcCGCCc -3'
miRNA:   3'- gCGGCUGC-C-----------GUGGCGGCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 36704 0.74 0.161012
Target:  5'- cCGCCGAUGaGCucguGCCGCuCGACC--CGCCg -3'
miRNA:   3'- -GCGGCUGC-CG----UGGCG-GCUGGaaGCGG- -5'
23409 5' -61.3 NC_005259.1 + 45413 0.75 0.149097
Target:  5'- gCGCUGAUGGcCGCCGCCGcuGCCUcguagGCCg -3'
miRNA:   3'- -GCGGCUGCC-GUGGCGGC--UGGAag---CGG- -5'
23409 5' -61.3 NC_005259.1 + 18525 0.75 0.134461
Target:  5'- cCGCCGAuuuCGGCAaggcagagcCCGCCGAcgaaCCaUCGCCg -3'
miRNA:   3'- -GCGGCU---GCCGU---------GGCGGCU----GGaAGCGG- -5'
23409 5' -61.3 NC_005259.1 + 53222 0.75 0.132383
Target:  5'- uCGCCcGCGcccugcuugagguucGCGCCGCCGACaccgUCGCCg -3'
miRNA:   3'- -GCGGcUGC---------------CGUGGCGGCUGga--AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.