miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23410 5' -52.3 NC_005259.1 + 14076 0.81 0.20722
Target:  5'- cGGCgGUgGCCUACGUGCgCAGCGAGGu -3'
miRNA:   3'- cCCG-UAgUGGAUGCACGaGUUGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 30449 0.73 0.558861
Target:  5'- uGGCuguUCAgCUACGUGCUCGAucaagcagccuCGAGGu -3'
miRNA:   3'- cCCGu--AGUgGAUGCACGAGUU-----------GCUCU- -5'
23410 5' -52.3 NC_005259.1 + 25775 0.73 0.563197
Target:  5'- cGGGCAgcucUCGCCcuacccaaucucggACGUGCUgcaCGGCGAGAc -3'
miRNA:   3'- -CCCGU----AGUGGa-------------UGCACGA---GUUGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 3335 0.73 0.569718
Target:  5'- cGGGCA--GCuCUGCGUGCUCGGCa--- -3'
miRNA:   3'- -CCCGUagUG-GAUGCACGAGUUGcucu -5'
23410 5' -52.3 NC_005259.1 + 17546 0.72 0.591576
Target:  5'- cGGGCAUUucuACUUcacCGUGCcCGACGAGAu -3'
miRNA:   3'- -CCCGUAG---UGGAu--GCACGaGUUGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 24575 0.7 0.701398
Target:  5'- uGGGCAcCGC--ACGUGCUCAACGc-- -3'
miRNA:   3'- -CCCGUaGUGgaUGCACGAGUUGCucu -5'
23410 5' -52.3 NC_005259.1 + 54666 0.7 0.722896
Target:  5'- -uGCAUU-CCUGCGUauGCUCGGCGAGc -3'
miRNA:   3'- ccCGUAGuGGAUGCA--CGAGUUGCUCu -5'
23410 5' -52.3 NC_005259.1 + 955 0.69 0.744032
Target:  5'- cGGGCAgcUCGCgCaACG-GCUCAACGGcGAc -3'
miRNA:   3'- -CCCGU--AGUG-GaUGCaCGAGUUGCU-CU- -5'
23410 5' -52.3 NC_005259.1 + 1258 0.69 0.754435
Target:  5'- cGGCAUCACCU-CGga-UC-ACGAGAa -3'
miRNA:   3'- cCCGUAGUGGAuGCacgAGuUGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 63284 0.69 0.754435
Target:  5'- cGGGuCGaUGCCUucACGUGCgagCAGCGGGGu -3'
miRNA:   3'- -CCC-GUaGUGGA--UGCACGa--GUUGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 16065 0.69 0.764713
Target:  5'- aGGGCAgcgCAUaugACGUGCUCgcgaacaccaucGugGAGAu -3'
miRNA:   3'- -CCCGUa--GUGga-UGCACGAG------------UugCUCU- -5'
23410 5' -52.3 NC_005259.1 + 34914 0.69 0.784846
Target:  5'- cGGGCAUCACaCUGC-UGcCUCGggcGCGAa- -3'
miRNA:   3'- -CCCGUAGUG-GAUGcAC-GAGU---UGCUcu -5'
23410 5' -52.3 NC_005259.1 + 8361 0.69 0.794679
Target:  5'- cGGUAUCGCUcgGCGgcggccucgGCaUCGGCGAGAg -3'
miRNA:   3'- cCCGUAGUGGa-UGCa--------CG-AGUUGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 50511 0.69 0.794679
Target:  5'- uGGGCGgugcgcugCACCUcgACGcGCUCGccucggGCGAGGa -3'
miRNA:   3'- -CCCGUa-------GUGGA--UGCaCGAGU------UGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 142 0.68 0.804341
Target:  5'- cGGCAagACCUACuggGCUCGcccgGCGGGGu -3'
miRNA:   3'- cCCGUagUGGAUGca-CGAGU----UGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 44121 0.68 0.823112
Target:  5'- -cGCAUCGCCUGuagcUGUGCguugAGCGAGGu -3'
miRNA:   3'- ccCGUAGUGGAU----GCACGag--UUGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 11041 0.68 0.841076
Target:  5'- cGGGUgGUCACCgcaugACGUgccgaucgGCUCAGCGuGGAa -3'
miRNA:   3'- -CCCG-UAGUGGa----UGCA--------CGAGUUGC-UCU- -5'
23410 5' -52.3 NC_005259.1 + 4240 0.67 0.849731
Target:  5'- aGGCccCGCCcACGUGCcUCGacuGCGAGGa -3'
miRNA:   3'- cCCGuaGUGGaUGCACG-AGU---UGCUCU- -5'
23410 5' -52.3 NC_005259.1 + 66023 0.67 0.881225
Target:  5'- gGGGCcgCACgUguugcgcGCGaGCUCGACGuAGAc -3'
miRNA:   3'- -CCCGuaGUGgA-------UGCaCGAGUUGC-UCU- -5'
23410 5' -52.3 NC_005259.1 + 40675 0.66 0.889416
Target:  5'- -cGCGagCGCCUugGUGCUCAcCGGc- -3'
miRNA:   3'- ccCGUa-GUGGAugCACGAGUuGCUcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.