Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23410 | 5' | -52.3 | NC_005259.1 | + | 34914 | 0.69 | 0.784846 |
Target: 5'- cGGGCAUCACaCUGC-UGcCUCGggcGCGAa- -3' miRNA: 3'- -CCCGUAGUG-GAUGcAC-GAGU---UGCUcu -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 37729 | 0.66 | 0.916479 |
Target: 5'- aGGCAcCGCCgccgACGagcUGCUCGAUGAc- -3' miRNA: 3'- cCCGUaGUGGa---UGC---ACGAGUUGCUcu -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 37834 | 0.66 | 0.896587 |
Target: 5'- cGGGCcaCACCUGCGUcgaGC-CGAUGuAGAc -3' miRNA: 3'- -CCCGuaGUGGAUGCA---CGaGUUGC-UCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 40675 | 0.66 | 0.889416 |
Target: 5'- -cGCGagCGCCUugGUGCUCAcCGGc- -3' miRNA: 3'- ccCGUa-GUGGAugCACGAGUuGCUcu -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 44121 | 0.68 | 0.823112 |
Target: 5'- -cGCAUCGCCUGuagcUGUGCguugAGCGAGGu -3' miRNA: 3'- ccCGUAGUGGAU----GCACGag--UUGCUCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 50340 | 0.66 | 0.90349 |
Target: 5'- cGGCccuuguccucgGUCACgaUGucggUGUGCUCGGCGAGAa -3' miRNA: 3'- cCCG-----------UAGUGg-AU----GCACGAGUUGCUCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 50511 | 0.69 | 0.794679 |
Target: 5'- uGGGCGgugcgcugCACCUcgACGcGCUCGccucggGCGAGGa -3' miRNA: 3'- -CCCGUa-------GUGGA--UGCaCGAGU------UGCUCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 53680 | 0.66 | 0.910122 |
Target: 5'- cGGGCAUCGCgaUG-GUGCgaccggUCAACGuGAa -3' miRNA: 3'- -CCCGUAGUGg-AUgCACG------AGUUGCuCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 54666 | 0.7 | 0.722896 |
Target: 5'- -uGCAUU-CCUGCGUauGCUCGGCGAGc -3' miRNA: 3'- ccCGUAGuGGAUGCA--CGAGUUGCUCu -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 63284 | 0.69 | 0.754435 |
Target: 5'- cGGGuCGaUGCCUucACGUGCgagCAGCGGGGu -3' miRNA: 3'- -CCC-GUaGUGGA--UGCACGa--GUUGCUCU- -5' |
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23410 | 5' | -52.3 | NC_005259.1 | + | 66023 | 0.67 | 0.881225 |
Target: 5'- gGGGCcgCACgUguugcgcGCGaGCUCGACGuAGAc -3' miRNA: 3'- -CCCGuaGUGgA-------UGCaCGAGUUGC-UCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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