miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23412 3' -56.7 NC_005259.1 + 29941 0.66 0.714503
Target:  5'- --cGCCA-CGCGGCCCGGucgcGGCUggugggGCGg -3'
miRNA:   3'- ccaCGGUaGCGCCGGGUC----UUGGa-----UGU- -5'
23412 3' -56.7 NC_005259.1 + 59153 0.66 0.704005
Target:  5'- cGGUGCCGgggaGCuGCUCAGGgcGCUUAUAc -3'
miRNA:   3'- -CCACGGUag--CGcCGGGUCU--UGGAUGU- -5'
23412 3' -56.7 NC_005259.1 + 15555 0.66 0.704005
Target:  5'- cGGUGCCAcccUCagGUGGCCacccuCGGGGCCaGCGc -3'
miRNA:   3'- -CCACGGU---AG--CGCCGG-----GUCUUGGaUGU- -5'
23412 3' -56.7 NC_005259.1 + 43463 0.66 0.69344
Target:  5'- aGGUGUCGUUGagcaacCGGCCCuGAgcgucgaacGCCUugAa -3'
miRNA:   3'- -CCACGGUAGC------GCCGGGuCU---------UGGAugU- -5'
23412 3' -56.7 NC_005259.1 + 47191 0.66 0.682819
Target:  5'- cGGUGCCGU--CGGCgaAGAACUUGCc -3'
miRNA:   3'- -CCACGGUAgcGCCGggUCUUGGAUGu -5'
23412 3' -56.7 NC_005259.1 + 10650 0.66 0.682819
Target:  5'- --gGCC-UCGCGGUCgAGcGCCUugAg -3'
miRNA:   3'- ccaCGGuAGCGCCGGgUCuUGGAugU- -5'
23412 3' -56.7 NC_005259.1 + 27531 0.66 0.671083
Target:  5'- --cGCCGUCGaGGCCCcacggcgGGAugUUGCGg -3'
miRNA:   3'- ccaCGGUAGCgCCGGG-------UCUugGAUGU- -5'
23412 3' -56.7 NC_005259.1 + 41641 0.67 0.650718
Target:  5'- cGGUGCCGgucUGCGGgCgcucggugagCGGGAUCUGCAc -3'
miRNA:   3'- -CCACGGUa--GCGCCgG----------GUCUUGGAUGU- -5'
23412 3' -56.7 NC_005259.1 + 25951 0.67 0.650718
Target:  5'- cGGUGCC----CGGCCCGccGAcGCCUGCGa -3'
miRNA:   3'- -CCACGGuagcGCCGGGU--CU-UGGAUGU- -5'
23412 3' -56.7 NC_005259.1 + 716 0.67 0.62922
Target:  5'- aGGUGgCAUCGCGaGaaucacaCCGGcgguGCCUACGc -3'
miRNA:   3'- -CCACgGUAGCGC-Cg------GGUCu---UGGAUGU- -5'
23412 3' -56.7 NC_005259.1 + 39611 0.7 0.459956
Target:  5'- uGGUGCCAUCaGCGacgguguacgcgcuGCCCGGuuuguuccguCCUACGg -3'
miRNA:   3'- -CCACGGUAG-CGC--------------CGGGUCuu--------GGAUGU- -5'
23412 3' -56.7 NC_005259.1 + 32281 0.7 0.434106
Target:  5'- --cGCCAUgauguuggugaUGCcuuGGCCCAGAGCCUugAg -3'
miRNA:   3'- ccaCGGUA-----------GCG---CCGGGUCUUGGAugU- -5'
23412 3' -56.7 NC_005259.1 + 16424 0.73 0.307362
Target:  5'- aGGUGcCCGUCgaGCGGCCCA-AACCggGCAc -3'
miRNA:   3'- -CCAC-GGUAG--CGCCGGGUcUUGGa-UGU- -5'
23412 3' -56.7 NC_005259.1 + 38948 0.8 0.117085
Target:  5'- cGGUGCCGcUGCcGCCgAGAGCCUGCAc -3'
miRNA:   3'- -CCACGGUaGCGcCGGgUCUUGGAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.