miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23413 3' -58.8 NC_005259.1 + 49560 0.66 0.626126
Target:  5'- -gGGCuGUUCGuCGGUcguggccaGACCGGCGGgCg -3'
miRNA:   3'- ugCCG-CAAGC-GCUA--------CUGGCCGCUgGa -5'
23413 3' -58.8 NC_005259.1 + 47950 0.66 0.594643
Target:  5'- gACGGCGgugC-CGAUGGCCGccGCG-CCg -3'
miRNA:   3'- -UGCCGCaa-GcGCUACUGGC--CGCuGGa -5'
23413 3' -58.8 NC_005259.1 + 3092 0.66 0.584195
Target:  5'- aGCcGCGca-GCGAUGAgCgGGCGGCCa -3'
miRNA:   3'- -UGcCGCaagCGCUACU-GgCCGCUGGa -5'
23413 3' -58.8 NC_005259.1 + 20132 0.67 0.573785
Target:  5'- cUGGCugccgUCGCGAUGacggcaGCCGGUGcCCUg -3'
miRNA:   3'- uGCCGca---AGCGCUAC------UGGCCGCuGGA- -5'
23413 3' -58.8 NC_005259.1 + 14556 0.67 0.573785
Target:  5'- cCGGCaGgccgaGCGggGACCGGCGAacaCCa -3'
miRNA:   3'- uGCCG-Caag--CGCuaCUGGCCGCU---GGa -5'
23413 3' -58.8 NC_005259.1 + 62720 0.67 0.573785
Target:  5'- gGCGGgGgaucUCGCucGAccgGACCGGCGGCa- -3'
miRNA:   3'- -UGCCgCa---AGCG--CUa--CUGGCCGCUGga -5'
23413 3' -58.8 NC_005259.1 + 27371 0.67 0.553102
Target:  5'- uUGGUGccCGgcaCGGUGACCGGCGGCg- -3'
miRNA:   3'- uGCCGCaaGC---GCUACUGGCCGCUGga -5'
23413 3' -58.8 NC_005259.1 + 58432 0.67 0.532647
Target:  5'- -gGGCaGaUUGCGcUGAUCGGUGGCCUu -3'
miRNA:   3'- ugCCG-CaAGCGCuACUGGCCGCUGGA- -5'
23413 3' -58.8 NC_005259.1 + 63859 0.67 0.532647
Target:  5'- cCGGCGa----GGUGGCCGGCuGGCCUu -3'
miRNA:   3'- uGCCGCaagcgCUACUGGCCG-CUGGA- -5'
23413 3' -58.8 NC_005259.1 + 7215 0.67 0.532647
Target:  5'- uGCGGUGgaucugCGUGAUGAacgaCGGCaGCCg -3'
miRNA:   3'- -UGCCGCaa----GCGCUACUg---GCCGcUGGa -5'
23413 3' -58.8 NC_005259.1 + 53184 0.68 0.51247
Target:  5'- cGCcGCccgUCGCGGUGuccCCGGCGAUCa -3'
miRNA:   3'- -UGcCGca-AGCGCUACu--GGCCGCUGGa -5'
23413 3' -58.8 NC_005259.1 + 16642 0.68 0.506478
Target:  5'- uACGGCGacgccgccgacaauUUCGgGGUGACCgccucgauguggucGGCGAuCCUg -3'
miRNA:   3'- -UGCCGC--------------AAGCgCUACUGG--------------CCGCU-GGA- -5'
23413 3' -58.8 NC_005259.1 + 47301 0.68 0.492615
Target:  5'- cCGGaca--GCGAccccuuggccUGACCGGCGGCCUu -3'
miRNA:   3'- uGCCgcaagCGCU----------ACUGGCCGCUGGA- -5'
23413 3' -58.8 NC_005259.1 + 50980 0.68 0.481847
Target:  5'- cGCGGCGa--GCGGUGucgagucACCGGCGAaaaaCCg -3'
miRNA:   3'- -UGCCGCaagCGCUAC-------UGGCCGCU----GGa -5'
23413 3' -58.8 NC_005259.1 + 13534 0.69 0.435352
Target:  5'- uGCGGCcaccaagcaGUUCGCGAUGuggcCCGcCGACCc -3'
miRNA:   3'- -UGCCG---------CAAGCGCUACu---GGCcGCUGGa -5'
23413 3' -58.8 NC_005259.1 + 4276 0.69 0.435352
Target:  5'- gGCGGCug-CGCugccacGAgcacgGACCGGCGGCCc -3'
miRNA:   3'- -UGCCGcaaGCG------CUa----CUGGCCGCUGGa -5'
23413 3' -58.8 NC_005259.1 + 58933 0.71 0.325754
Target:  5'- uCGGCGggCGCGGUGGCagcguCGGCcuuGGCCa -3'
miRNA:   3'- uGCCGCaaGCGCUACUG-----GCCG---CUGGa -5'
23413 3' -58.8 NC_005259.1 + 64027 0.71 0.325754
Target:  5'- -aGGCGcg-GCGA-GGCCGGUGACCg -3'
miRNA:   3'- ugCCGCaagCGCUaCUGGCCGCUGGa -5'
23413 3' -58.8 NC_005259.1 + 65204 0.72 0.289416
Target:  5'- cCGGUGgguaUUCGaUGAUGACCGGCcuGACCUc -3'
miRNA:   3'- uGCCGC----AAGC-GCUACUGGCCG--CUGGA- -5'
23413 3' -58.8 NC_005259.1 + 59402 0.73 0.238013
Target:  5'- cGCGaGCGUgaccUCGCGcAUGGCguCGGCGGCCa -3'
miRNA:   3'- -UGC-CGCA----AGCGC-UACUG--GCCGCUGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.