miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23416 3' -54 NC_005259.1 + 2763 0.67 0.816694
Target:  5'- -aGUACGacCACCUCcccgaGC-CGACGCACc -3'
miRNA:   3'- ggCGUGCaaGUGGAG-----CGaGUUGCGUG- -5'
23416 3' -54 NC_005259.1 + 3728 0.66 0.85102
Target:  5'- uCCGCACccUCACCggUCGCacgaccuaucaggUCGACaGCGCc -3'
miRNA:   3'- -GGCGUGcaAGUGG--AGCG-------------AGUUG-CGUG- -5'
23416 3' -54 NC_005259.1 + 5849 0.67 0.797939
Target:  5'- gCGCAUGcucgUCGCCUCgguGCUCcACgaGCACa -3'
miRNA:   3'- gGCGUGCa---AGUGGAG---CGAGuUG--CGUG- -5'
23416 3' -54 NC_005259.1 + 6365 0.7 0.641695
Target:  5'- gCGCACGUugUCGCCgggCGCgauggUCAACGuCAUu -3'
miRNA:   3'- gGCGUGCA--AGUGGa--GCG-----AGUUGC-GUG- -5'
23416 3' -54 NC_005259.1 + 9465 0.66 0.851857
Target:  5'- uCCGCACGgUCACgUCaGUguuguCGCGCa -3'
miRNA:   3'- -GGCGUGCaAGUGgAG-CGaguu-GCGUG- -5'
23416 3' -54 NC_005259.1 + 10138 0.67 0.807406
Target:  5'- aCGCGCG--CGCCcgcCGUUCGcACGCACu -3'
miRNA:   3'- gGCGUGCaaGUGGa--GCGAGU-UGCGUG- -5'
23416 3' -54 NC_005259.1 + 15202 0.69 0.67423
Target:  5'- aCCGCAUGaugCugUggCGCUCGGCGCuCg -3'
miRNA:   3'- -GGCGUGCaa-GugGa-GCGAGUUGCGuG- -5'
23416 3' -54 NC_005259.1 + 18434 0.72 0.482493
Target:  5'- gCGCACGa-CGCCUCGUgCAacaccGCGCACa -3'
miRNA:   3'- gGCGUGCaaGUGGAGCGaGU-----UGCGUG- -5'
23416 3' -54 NC_005259.1 + 21230 0.68 0.758485
Target:  5'- gCCGa--GUaCGCCUCGg-CAGCGCGCg -3'
miRNA:   3'- -GGCgugCAaGUGGAGCgaGUUGCGUG- -5'
23416 3' -54 NC_005259.1 + 22653 0.67 0.807406
Target:  5'- aCGC-CGccCACCacaUCGC-CGACGCACu -3'
miRNA:   3'- gGCGuGCaaGUGG---AGCGaGUUGCGUG- -5'
23416 3' -54 NC_005259.1 + 23219 0.66 0.843383
Target:  5'- -aGgACGggUACCgucCGCUCGACGC-Ca -3'
miRNA:   3'- ggCgUGCaaGUGGa--GCGAGUUGCGuG- -5'
23416 3' -54 NC_005259.1 + 26648 0.67 0.816694
Target:  5'- gCGUGCGcUCGgCagGUUCGGCGCACc -3'
miRNA:   3'- gGCGUGCaAGUgGagCGAGUUGCGUG- -5'
23416 3' -54 NC_005259.1 + 29119 0.82 0.12391
Target:  5'- cCUGCugGUgagcgcggcgguauUCGCCUCGCUCAcCGCGCu -3'
miRNA:   3'- -GGCGugCA--------------AGUGGAGCGAGUuGCGUG- -5'
23416 3' -54 NC_005259.1 + 29213 0.71 0.565909
Target:  5'- cCCGCAUgGUUCGCCagC-CUCGGCGCGu -3'
miRNA:   3'- -GGCGUG-CAAGUGGa-GcGAGUUGCGUg -5'
23416 3' -54 NC_005259.1 + 31020 0.67 0.807406
Target:  5'- uCCaCACGUgaucgugccgaUCACCUCGCcgAACGCGu -3'
miRNA:   3'- -GGcGUGCA-----------AGUGGAGCGagUUGCGUg -5'
23416 3' -54 NC_005259.1 + 31905 0.7 0.641695
Target:  5'- cCCgGCGCGagCGCCUCaauCUCGucACGCACu -3'
miRNA:   3'- -GG-CGUGCaaGUGGAGc--GAGU--UGCGUG- -5'
23416 3' -54 NC_005259.1 + 33414 0.76 0.328677
Target:  5'- aCCGCGCGUaCGCCUC-C-CAGCGCGg -3'
miRNA:   3'- -GGCGUGCAaGUGGAGcGaGUUGCGUg -5'
23416 3' -54 NC_005259.1 + 36054 0.67 0.816694
Target:  5'- cCCGCGCGagCACCaccugcugugUGCUCGuCGCGg -3'
miRNA:   3'- -GGCGUGCaaGUGGa---------GCGAGUuGCGUg -5'
23416 3' -54 NC_005259.1 + 36239 0.66 0.843383
Target:  5'- gCCaGCGCGagCGCCUgCGUcggCAGCGcCACg -3'
miRNA:   3'- -GG-CGUGCaaGUGGA-GCGa--GUUGC-GUG- -5'
23416 3' -54 NC_005259.1 + 36579 0.67 0.797939
Target:  5'- aCgGCACGgcuaCACCUCGUagAcGCGUACg -3'
miRNA:   3'- -GgCGUGCaa--GUGGAGCGagU-UGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.