miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23416 3' -54 NC_005259.1 + 31020 0.67 0.807406
Target:  5'- uCCaCACGUgaucgugccgaUCACCUCGCcgAACGCGu -3'
miRNA:   3'- -GGcGUGCA-----------AGUGGAGCGagUUGCGUg -5'
23416 3' -54 NC_005259.1 + 5849 0.67 0.797939
Target:  5'- gCGCAUGcucgUCGCCUCgguGCUCcACgaGCACa -3'
miRNA:   3'- gGCGUGCa---AGUGGAG---CGAGuUG--CGUG- -5'
23416 3' -54 NC_005259.1 + 52920 0.67 0.797939
Target:  5'- aCCGCcgacuCGaUgGCCuggUCGCUCAACGCcCg -3'
miRNA:   3'- -GGCGu----GCaAgUGG---AGCGAGUUGCGuG- -5'
23416 3' -54 NC_005259.1 + 36579 0.67 0.797939
Target:  5'- aCgGCACGgcuaCACCUCGUagAcGCGUACg -3'
miRNA:   3'- -GgCGUGCaa--GUGGAGCGagU-UGCGUG- -5'
23416 3' -54 NC_005259.1 + 62846 0.67 0.778508
Target:  5'- gCGCGCGguugacgagCAgC-CGCUCGGCGCGa -3'
miRNA:   3'- gGCGUGCaa-------GUgGaGCGAGUUGCGUg -5'
23416 3' -54 NC_005259.1 + 46693 0.67 0.778508
Target:  5'- gCCGC-CGc-CGCgUCcCUCGACGCGCg -3'
miRNA:   3'- -GGCGuGCaaGUGgAGcGAGUUGCGUG- -5'
23416 3' -54 NC_005259.1 + 21230 0.68 0.758485
Target:  5'- gCCGa--GUaCGCCUCGg-CAGCGCGCg -3'
miRNA:   3'- -GGCgugCAaGUGGAGCgaGUUGCGUG- -5'
23416 3' -54 NC_005259.1 + 63666 0.68 0.727532
Target:  5'- aCGC-CGgaCACCUCGggCAccgGCGCGCc -3'
miRNA:   3'- gGCGuGCaaGUGGAGCgaGU---UGCGUG- -5'
23416 3' -54 NC_005259.1 + 15202 0.69 0.67423
Target:  5'- aCCGCAUGaugCugUggCGCUCGGCGCuCg -3'
miRNA:   3'- -GGCGUGCaa-GugGa-GCGAGUUGCGuG- -5'
23416 3' -54 NC_005259.1 + 66851 0.7 0.641695
Target:  5'- cCCGCACGggCcaccgaucgGCCUUGUUCGcacCGCGCc -3'
miRNA:   3'- -GGCGUGCaaG---------UGGAGCGAGUu--GCGUG- -5'
23416 3' -54 NC_005259.1 + 31905 0.7 0.641695
Target:  5'- cCCgGCGCGagCGCCUCaauCUCGucACGCACu -3'
miRNA:   3'- -GG-CGUGCaaGUGGAGc--GAGU--UGCGUG- -5'
23416 3' -54 NC_005259.1 + 6365 0.7 0.641695
Target:  5'- gCGCACGUugUCGCCgggCGCgauggUCAACGuCAUu -3'
miRNA:   3'- gGCGUGCA--AGUGGa--GCG-----AGUUGC-GUG- -5'
23416 3' -54 NC_005259.1 + 41267 0.7 0.63082
Target:  5'- cCCGguCGagCAcCCUCG-UCGGCGCACu -3'
miRNA:   3'- -GGCguGCaaGU-GGAGCgAGUUGCGUG- -5'
23416 3' -54 NC_005259.1 + 29213 0.71 0.565909
Target:  5'- cCCGCAUgGUUCGCCagC-CUCGGCGCGu -3'
miRNA:   3'- -GGCGUG-CAAGUGGa-GcGAGUUGCGUg -5'
23416 3' -54 NC_005259.1 + 52134 0.72 0.523566
Target:  5'- aCCGC-CGUccggCACCUCGC-CGAgGCAg -3'
miRNA:   3'- -GGCGuGCAa---GUGGAGCGaGUUgCGUg -5'
23416 3' -54 NC_005259.1 + 38852 0.72 0.523566
Target:  5'- -aGCGCGUUCuCgaUGUUCGACGCGCc -3'
miRNA:   3'- ggCGUGCAAGuGgaGCGAGUUGCGUG- -5'
23416 3' -54 NC_005259.1 + 59396 0.72 0.502847
Target:  5'- uCCGCGCGcgagcgUgACCUCGCgCAugGCGu -3'
miRNA:   3'- -GGCGUGCa-----AgUGGAGCGaGUugCGUg -5'
23416 3' -54 NC_005259.1 + 66026 0.72 0.502847
Target:  5'- gCCGCACGUguugCGCgcgaGCUCGACGUAg -3'
miRNA:   3'- -GGCGUGCAa---GUGgag-CGAGUUGCGUg -5'
23416 3' -54 NC_005259.1 + 18434 0.72 0.482493
Target:  5'- gCGCACGa-CGCCUCGUgCAacaccGCGCACa -3'
miRNA:   3'- gGCGUGCaaGUGGAGCGaGU-----UGCGUG- -5'
23416 3' -54 NC_005259.1 + 42139 0.73 0.462546
Target:  5'- aCCGUACGUcgCGCC-CGCgUUggUGCACg -3'
miRNA:   3'- -GGCGUGCAa-GUGGaGCG-AGuuGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.