miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23416 5' -55 NC_005259.1 + 63288 0.66 0.793182
Target:  5'- uCGAUGCcuucacguGCGAGCAGcggGGUCagGAUGUc -3'
miRNA:   3'- -GCUACG--------CGCUCGUCua-CCAG--CUGCAc -5'
23416 5' -55 NC_005259.1 + 26442 0.67 0.7537
Target:  5'- cCGAgcGgGCGGGCcGGUGGgcCGAUGUGg -3'
miRNA:   3'- -GCUa-CgCGCUCGuCUACCa-GCUGCAC- -5'
23416 5' -55 NC_005259.1 + 13781 0.67 0.7537
Target:  5'- uCGAcgGCGaCGAGCAG-UGGUgCGACa-- -3'
miRNA:   3'- -GCUa-CGC-GCUCGUCuACCA-GCUGcac -5'
23416 5' -55 NC_005259.1 + 18314 0.68 0.711255
Target:  5'- cCGGUGUGCGAcaccgaggccgguGCGuucGUGGUCGACGc- -3'
miRNA:   3'- -GCUACGCGCU-------------CGUc--UACCAGCUGCac -5'
23416 5' -55 NC_005259.1 + 34122 0.68 0.687912
Target:  5'- cCGG-GCGCGAGCAcguccGGUauccacucuuccgaGGUCGugGUGc -3'
miRNA:   3'- -GCUaCGCGCUCGU-----CUA--------------CCAGCugCAC- -5'
23416 5' -55 NC_005259.1 + 47156 0.68 0.673994
Target:  5'- -cGUGCGC-AGCAGAUcaccguagcggcgaaGGUCGGCGg- -3'
miRNA:   3'- gcUACGCGcUCGUCUA---------------CCAGCUGCac -5'
23416 5' -55 NC_005259.1 + 19187 0.68 0.669698
Target:  5'- aCGGUGCccucgacaGCGAGCucGUGGUgcgggcggCGACGUGg -3'
miRNA:   3'- -GCUACG--------CGCUCGucUACCA--------GCUGCAC- -5'
23416 5' -55 NC_005259.1 + 47704 0.69 0.604949
Target:  5'- gGAUGCGCG-GCAGugccuuGUCGGCGa- -3'
miRNA:   3'- gCUACGCGCuCGUCuac---CAGCUGCac -5'
23416 5' -55 NC_005259.1 + 65984 0.7 0.551512
Target:  5'- aGgcGCGcCGAGCAGccGcUCGACGUGg -3'
miRNA:   3'- gCuaCGC-GCUCGUCuaCcAGCUGCAC- -5'
23416 5' -55 NC_005259.1 + 52553 0.73 0.403162
Target:  5'- gGAUGUGCGAGCccGAcaUGGUCGACc-- -3'
miRNA:   3'- gCUACGCGCUCGu-CU--ACCAGCUGcac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.