miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23416	5'	-55	NC_005259.1	+	63288	0.66	0.793182
	Target:  5'- uCGAUGCcuucacguGCGAGCAGcggGGUCagGAUGUc -3' miRNA:   3'- -GCUACG--------CGCUCGUCua-CCAG--CUGCAc -5'
23416	5'	-55	NC_005259.1	+	13781	0.67	0.7537
	Target:  5'- uCGAcgGCGaCGAGCAG-UGGUgCGACa-- -3' miRNA:   3'- -GCUa-CGC-GCUCGUCuACCA-GCUGcac -5'
23416	5'	-55	NC_005259.1	+	26442	0.67	0.7537
	Target:  5'- cCGAgcGgGCGGGCcGGUGGgcCGAUGUGg -3' miRNA:   3'- -GCUa-CgCGCUCGuCUACCa-GCUGCAC- -5'
23416	5'	-55	NC_005259.1	+	18314	0.68	0.711255
	Target:  5'- cCGGUGUGCGAcaccgaggccgguGCGuucGUGGUCGACGc- -3' miRNA:   3'- -GCUACGCGCU-------------CGUc--UACCAGCUGCac -5'
23416	5'	-55	NC_005259.1	+	34122	0.68	0.687912
	Target:  5'- cCGG-GCGCGAGCAcguccGGUauccacucuuccgaGGUCGugGUGc -3' miRNA:   3'- -GCUaCGCGCUCGU-----CUA--------------CCAGCugCAC- -5'
23416	5'	-55	NC_005259.1	+	47156	0.68	0.673994
	Target:  5'- -cGUGCGC-AGCAGAUcaccguagcggcgaaGGUCGGCGg- -3' miRNA:   3'- gcUACGCGcUCGUCUA---------------CCAGCUGCac -5'
23416	5'	-55	NC_005259.1	+	19187	0.68	0.669698
	Target:  5'- aCGGUGCccucgacaGCGAGCucGUGGUgcgggcggCGACGUGg -3' miRNA:   3'- -GCUACG--------CGCUCGucUACCA--------GCUGCAC- -5'
23416	5'	-55	NC_005259.1	+	47704	0.69	0.604949
	Target:  5'- gGAUGCGCG-GCAGugccuuGUCGGCGa- -3' miRNA:   3'- gCUACGCGCuCGUCuac---CAGCUGCac -5'
23416	5'	-55	NC_005259.1	+	65984	0.7	0.551512
	Target:  5'- aGgcGCGcCGAGCAGccGcUCGACGUGg -3' miRNA:   3'- gCuaCGC-GCUCGUCuaCcAGCUGCAC- -5'
23416	5'	-55	NC_005259.1	+	52553	0.73	0.403162
	Target:  5'- gGAUGUGCGAGCccGAcaUGGUCGACc-- -3' miRNA:   3'- gCUACGCGCUCGu-CU--ACCAGCUGcac -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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