Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 23417 | 3' | -54.7 | NC_005259.1 | + | 23644 | 0.69 | 0.609082 |
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Target: 5'- -gGUUUCGGCccgCCGaCGGCgacggcuggACCGCCg -3' miRNA: 3'- caCAAAGUCGca-GGUaGCCG---------UGGCGG- -5' |
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| 23417 | 3' | -54.7 | NC_005259.1 | + | 4456 | 0.69 | 0.605827 |
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Target: 5'- aGUGgg-CAGCGUaugggccaaggCCAUCGGCgguggaccauggugAUCGCCa -3' miRNA: 3'- -CACaaaGUCGCA-----------GGUAGCCG--------------UGGCGG- -5' |
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| 23417 | 3' | -54.7 | NC_005259.1 | + | 37362 | 0.7 | 0.598238 |
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Target: 5'- cUGUgcgagUAGCucacgCCcUCGGCACCGCCc -3' miRNA: 3'- cACAaa---GUCGca---GGuAGCCGUGGCGG- -5' |
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| 23417 | 3' | -54.7 | NC_005259.1 | + | 66165 | 0.71 | 0.534048 |
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Target: 5'- uGUGUgc--GCGcaugCuCAUCGGCACCGCUg -3' miRNA: 3'- -CACAaaguCGCa---G-GUAGCCGUGGCGG- -5' |
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| 23417 | 3' | -54.7 | NC_005259.1 | + | 22752 | 0.71 | 0.534048 |
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Target: 5'- ------aGGCGUaCCGaaaCGGCACCGCCa -3' miRNA: 3'- cacaaagUCGCA-GGUa--GCCGUGGCGG- -5' |
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| 23417 | 3' | -54.7 | NC_005259.1 | + | 3130 | 0.71 | 0.492621 |
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Target: 5'- cGUGgg-CAGCGga---CGGCACCGCCc -3' miRNA: 3'- -CACaaaGUCGCagguaGCCGUGGCGG- -5' |
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| 23417 | 3' | -54.7 | NC_005259.1 | + | 61604 | 0.74 | 0.353036 |
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Target: 5'- gGUGgggUCGGCGgggaaCAgcagacCGGCACCGCCg -3' miRNA: 3'- -CACaa-AGUCGCag---GUa-----GCCGUGGCGG- -5' |
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| 23417 | 3' | -54.7 | NC_005259.1 | + | 35452 | 0.74 | 0.344777 |
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Target: 5'- ----gUCcGCGcCCAcCGGCACCGCCa -3' miRNA: 3'- cacaaAGuCGCaGGUaGCCGUGGCGG- -5' |
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| 23417 | 3' | -54.7 | NC_005259.1 | + | 53739 | 0.76 | 0.269897 |
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Target: 5'- aUGUcgCcgGGUGUCCAcUCGGUGCCGCCg -3' miRNA: 3'- cACAaaG--UCGCAGGU-AGCCGUGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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