miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23417 5' -65 NC_005259.1 + 67167 0.66 0.327503
Target:  5'- gGUGGCGGCCaugCCGCCgAUgaUGCC--CGCc -3'
miRNA:   3'- -CGCCGCCGG---GGCGGgUA--GCGGcuGCG- -5'
23417 5' -65 NC_005259.1 + 49435 0.66 0.349927
Target:  5'- cCGGCGaGCgCCGCCUugGUCggcaGCCgGAUGCc -3'
miRNA:   3'- cGCCGC-CGgGGCGGG--UAG----CGG-CUGCG- -5'
23417 5' -65 NC_005259.1 + 50682 0.66 0.342332
Target:  5'- uCGGUgccgacgaGGCgCUGCUCGUCGUCG-CGCu -3'
miRNA:   3'- cGCCG--------CCGgGGCGGGUAGCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 7182 0.66 0.320269
Target:  5'- cCGGCGaguGCCCgGCCU---GCgGACGCa -3'
miRNA:   3'- cGCCGC---CGGGgCGGGuagCGgCUGCG- -5'
23417 5' -65 NC_005259.1 + 33242 0.66 0.342332
Target:  5'- cGCGuaCGuGCCagauCUGCCCGcagCGCCGAUGCu -3'
miRNA:   3'- -CGCc-GC-CGG----GGCGGGUa--GCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 12562 0.66 0.319552
Target:  5'- cGgGGUGGCCcgccagauccaugCCGCCCcacgCGUCGACccauGCg -3'
miRNA:   3'- -CgCCGCCGG-------------GGCGGGua--GCGGCUG----CG- -5'
23417 5' -65 NC_005259.1 + 8550 0.67 0.306162
Target:  5'- uCGGCGGUgUaGCCCAUgCGCCG-CaGCa -3'
miRNA:   3'- cGCCGCCGgGgCGGGUA-GCGGCuG-CG- -5'
23417 5' -65 NC_005259.1 + 2223 0.67 0.285902
Target:  5'- aGCGccCGGCCUCGCCauuuGUCGgCGACaGCc -3'
miRNA:   3'- -CGCc-GCCGGGGCGGg---UAGCgGCUG-CG- -5'
23417 5' -65 NC_005259.1 + 19517 0.67 0.313156
Target:  5'- cGCGcGCGGaaauccucaCCgCCGUgCAg-GCCGACGCg -3'
miRNA:   3'- -CGC-CGCC---------GG-GGCGgGUagCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 53460 0.67 0.306162
Target:  5'- aCGGCGG-CUgGCUCGUCGuCCGGCccGCc -3'
miRNA:   3'- cGCCGCCgGGgCGGGUAGC-GGCUG--CG- -5'
23417 5' -65 NC_005259.1 + 33127 0.67 0.315986
Target:  5'- cGCGGCaGCCgCCGCgCGUgaucuugccguagacCGCCuGAgGCa -3'
miRNA:   3'- -CGCCGcCGG-GGCGgGUA---------------GCGG-CUgCG- -5'
23417 5' -65 NC_005259.1 + 53194 0.67 0.279388
Target:  5'- cGCGGUGuCCCCGgCgaucagauucgCGUCGCCcGCGCc -3'
miRNA:   3'- -CGCCGCcGGGGCgG-----------GUAGCGGcUGCG- -5'
23417 5' -65 NC_005259.1 + 1782 0.67 0.285246
Target:  5'- -gGGUccgacgaGGCCCCcaagGCUguCAUgGCCGACGCg -3'
miRNA:   3'- cgCCG-------CCGGGG----CGG--GUAgCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 57148 0.67 0.285902
Target:  5'- aGUaGUGGCCCU-CCCAcgUGCCGaACGCg -3'
miRNA:   3'- -CGcCGCCGGGGcGGGUa-GCGGC-UGCG- -5'
23417 5' -65 NC_005259.1 + 25074 0.67 0.285902
Target:  5'- -gGGUGGCgCUGCCac-CGCCGcuGCGCc -3'
miRNA:   3'- cgCCGCCGgGGCGGguaGCGGC--UGCG- -5'
23417 5' -65 NC_005259.1 + 44733 0.67 0.285902
Target:  5'- gGCaGCGcGCCCuCGaCCG-CGCCGAgGCu -3'
miRNA:   3'- -CGcCGC-CGGG-GCgGGUaGCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 58918 0.67 0.285902
Target:  5'- uCGGCGGUCuuG-UCGUCGgCgGGCGCg -3'
miRNA:   3'- cGCCGCCGGggCgGGUAGC-GgCUGCG- -5'
23417 5' -65 NC_005259.1 + 8023 0.67 0.288541
Target:  5'- cCGGCGGCCaccccguuucgcgaaCUGUCCGacacCGCCGGuCGCc -3'
miRNA:   3'- cGCCGCCGG---------------GGCGGGUa---GCGGCU-GCG- -5'
23417 5' -65 NC_005259.1 + 29131 0.67 0.292536
Target:  5'- cGCGGCGguauucGCCUCGCUCAccgCGCuCGGCu- -3'
miRNA:   3'- -CGCCGC------CGGGGCGGGUa--GCG-GCUGcg -5'
23417 5' -65 NC_005259.1 + 66274 0.67 0.292536
Target:  5'- gGCGGCGGCUCaCGCcgccaCCAUCcacuCUGcGCGCa -3'
miRNA:   3'- -CGCCGCCGGG-GCG-----GGUAGc---GGC-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.