miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23417 5' -65 NC_005259.1 + 4366 0.68 0.237068
Target:  5'- aCGGCacgcccguGCCCUGCUCAUCGCCaa-GCa -3'
miRNA:   3'- cGCCGc-------CGGGGCGGGUAGCGGcugCG- -5'
23417 5' -65 NC_005259.1 + 32931 0.68 0.242193
Target:  5'- cGCGGCGGUaucgucaccaUCC-CCUGUCGCUgcucgauGACGCa -3'
miRNA:   3'- -CGCCGCCG----------GGGcGGGUAGCGG-------CUGCG- -5'
23417 5' -65 NC_005259.1 + 52346 0.68 0.242193
Target:  5'- cCGGUGuGCCgCUGuucgucuCCCAUCGCCGACu- -3'
miRNA:   3'- cGCCGC-CGG-GGC-------GGGUAGCGGCUGcg -5'
23417 5' -65 NC_005259.1 + 46675 0.68 0.242768
Target:  5'- uCGGCGaGCUCgGCCUgagcCGCCGcCGCg -3'
miRNA:   3'- cGCCGC-CGGGgCGGGua--GCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 46575 0.68 0.246826
Target:  5'- cGCGGCGucgaccGCgCCGCCCGaggcgagcagcgcgUCGuuGGCGg -3'
miRNA:   3'- -CGCCGC------CGgGGCGGGU--------------AGCggCUGCg -5'
23417 5' -65 NC_005259.1 + 4117 0.68 0.253316
Target:  5'- uCGGCGGCCUCGacguggccaagaCCGUCGgCGAguucaaggaCGCg -3'
miRNA:   3'- cGCCGCCGGGGCg-----------GGUAGCgGCU---------GCG- -5'
23417 5' -65 NC_005259.1 + 34482 0.68 0.259945
Target:  5'- uUGGUGGugucCCCCGCCgacgcgacgacgaUGUCGCCGACa- -3'
miRNA:   3'- cGCCGCC----GGGGCGG-------------GUAGCGGCUGcg -5'
23417 5' -65 NC_005259.1 + 52459 0.68 0.260554
Target:  5'- gGCGGaUGGCagaccaCCGCCCGcgaauaCGUCGAgGCg -3'
miRNA:   3'- -CGCC-GCCGg-----GGCGGGUa-----GCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 14315 0.68 0.260554
Target:  5'- aUGGCcGCCCucgacgccgcCGCCCGcgugcgggcCGCCGACGCc -3'
miRNA:   3'- cGCCGcCGGG----------GCGGGUa--------GCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 43419 0.68 0.260554
Target:  5'- gGCGGCGGuuuCCUCGCUCGacUgGCUG-CGCu -3'
miRNA:   3'- -CGCCGCC---GGGGCGGGU--AgCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 58691 0.68 0.260554
Target:  5'- cGCGG-GG-UCgGCUCGUCGCCGcCGCc -3'
miRNA:   3'- -CGCCgCCgGGgCGGGUAGCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 35521 0.68 0.260554
Target:  5'- cGCcGCcgGGCacaCCGCCCgccGUCGCCGAucCGCc -3'
miRNA:   3'- -CGcCG--CCGg--GGCGGG---UAGCGGCU--GCG- -5'
23417 5' -65 NC_005259.1 + 18468 0.68 0.260554
Target:  5'- cCGGUccuGaGCCgUGCCCGaCGCCGACGa -3'
miRNA:   3'- cGCCG---C-CGGgGCGGGUaGCGGCUGCg -5'
23417 5' -65 NC_005259.1 + 7965 0.68 0.266715
Target:  5'- uUGGUGGCCCaCGCCCAcCGCau-UGUu -3'
miRNA:   3'- cGCCGCCGGG-GCGGGUaGCGgcuGCG- -5'
23417 5' -65 NC_005259.1 + 4302 0.68 0.268586
Target:  5'- cCGGCGGCCCUGCgaugagcgcgaccaaCCucgUGCCGGaccucguCGCg -3'
miRNA:   3'- cGCCGCCGGGGCG---------------GGua-GCGGCU-------GCG- -5'
23417 5' -65 NC_005259.1 + 29908 0.68 0.272992
Target:  5'- aGgGGUGGCugCCCGagaCCAUCGaCgCGugGCc -3'
miRNA:   3'- -CgCCGCCG--GGGCg--GGUAGC-G-GCugCG- -5'
23417 5' -65 NC_005259.1 + 7428 0.68 0.272992
Target:  5'- uCGGCGGUgCCCGCgCCGcauggcagCGCCGAgGa -3'
miRNA:   3'- cGCCGCCG-GGGCG-GGUa-------GCGGCUgCg -5'
23417 5' -65 NC_005259.1 + 16457 0.68 0.272992
Target:  5'- uCGGCaucGGuaCCCCGCCgCAgaUCGCCGucaaggGCGCa -3'
miRNA:   3'- cGCCG---CC--GGGGCGG-GU--AGCGGC------UGCG- -5'
23417 5' -65 NC_005259.1 + 53194 0.67 0.279388
Target:  5'- cGCGGUGuCCCCGgCgaucagauucgCGUCGCCcGCGCc -3'
miRNA:   3'- -CGCCGCcGGGGCgG-----------GUAGCGGcUGCG- -5'
23417 5' -65 NC_005259.1 + 1782 0.67 0.285246
Target:  5'- -gGGUccgacgaGGCCCCcaagGCUguCAUgGCCGACGCg -3'
miRNA:   3'- cgCCG-------CCGGGG----CGG--GUAgCGGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.