Results 61 - 80 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23417 | 5' | -65 | NC_005259.1 | + | 46575 | 0.68 | 0.246826 |
Target: 5'- cGCGGCGucgaccGCgCCGCCCGaggcgagcagcgcgUCGuuGGCGg -3' miRNA: 3'- -CGCCGC------CGgGGCGGGU--------------AGCggCUGCg -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 46675 | 0.68 | 0.242768 |
Target: 5'- uCGGCGaGCUCgGCCUgagcCGCCGcCGCg -3' miRNA: 3'- cGCCGC-CGGGgCGGGua--GCGGCuGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 52346 | 0.68 | 0.242193 |
Target: 5'- cCGGUGuGCCgCUGuucgucuCCCAUCGCCGACu- -3' miRNA: 3'- cGCCGC-CGG-GGC-------GGGUAGCGGCUGcg -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 32931 | 0.68 | 0.242193 |
Target: 5'- cGCGGCGGUaucgucaccaUCC-CCUGUCGCUgcucgauGACGCa -3' miRNA: 3'- -CGCCGCCG----------GGGcGGGUAGCGG-------CUGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 4366 | 0.68 | 0.237068 |
Target: 5'- aCGGCacgcccguGCCCUGCUCAUCGCCaa-GCa -3' miRNA: 3'- cGCCGc-------CGGGGCGGGUAGCGGcugCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 52119 | 0.68 | 0.237068 |
Target: 5'- aGCGGCaauCUCCGCaCCGccguccggcaccUCGCCGAgGCa -3' miRNA: 3'- -CGCCGcc-GGGGCG-GGU------------AGCGGCUgCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 24024 | 0.69 | 0.23148 |
Target: 5'- cGgGGCuGGCgaaauggaaCCGCCgcaaCGUCGUCGGCGCg -3' miRNA: 3'- -CgCCG-CCGg--------GGCGG----GUAGCGGCUGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 37065 | 0.69 | 0.226547 |
Target: 5'- gGCGGCGGUguCCaCGUCCA-CGCaccggcggugguguaGACGCg -3' miRNA: 3'- -CGCCGCCG--GG-GCGGGUaGCGg--------------CUGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 2162 | 0.69 | 0.220638 |
Target: 5'- aGCGGCGucGagCCGCCgGUUGCCGAgGUc -3' miRNA: 3'- -CGCCGC--CggGGCGGgUAGCGGCUgCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 38984 | 0.69 | 0.220638 |
Target: 5'- cGCGGauaCCCUGCCCAgccUCGuuGAgCGCg -3' miRNA: 3'- -CGCCgccGGGGCGGGU---AGCggCU-GCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 43198 | 0.69 | 0.220638 |
Target: 5'- uCGGCGGCgaugucgacgCCCGCCUgaccCGCCGA-GCu -3' miRNA: 3'- cGCCGCCG----------GGGCGGGua--GCGGCUgCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 41250 | 0.69 | 0.218522 |
Target: 5'- cCGGUGcGCCucaCCGCCCcggucgagcacccUCGUCGGCGCa -3' miRNA: 3'- cGCCGC-CGG---GGCGGGu------------AGCGGCUGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 43264 | 0.69 | 0.217471 |
Target: 5'- cCGG-GuGCCUgagaguugaccgcagCGCCCGcCGCCGACGCg -3' miRNA: 3'- cGCCgC-CGGG---------------GCGGGUaGCGGCUGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 18623 | 0.69 | 0.215381 |
Target: 5'- aGCGGUGugccgcgcaucGCCCCGUUC-UCGCauuGGCGCg -3' miRNA: 3'- -CGCCGC-----------CGGGGCGGGuAGCGg--CUGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 25950 | 0.69 | 0.210232 |
Target: 5'- cCGGU-GCCCgGCCC---GCCGACGCc -3' miRNA: 3'- cGCCGcCGGGgCGGGuagCGGCUGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 37195 | 0.69 | 0.205189 |
Target: 5'- aGCuGCGGCCCuUGCcgCCAcCGCCGcCGCc -3' miRNA: 3'- -CGcCGCCGGG-GCG--GGUaGCGGCuGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 3137 | 0.7 | 0.200252 |
Target: 5'- aGCGGaCGGCaCCGCCCGUgggacuacaCGgUGAUGCc -3' miRNA: 3'- -CGCC-GCCGgGGCGGGUA---------GCgGCUGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 18534 | 0.7 | 0.199764 |
Target: 5'- uCGGCaaGGCagagCCCGCcgacgaaCCAUCGCCGuACGCc -3' miRNA: 3'- cGCCG--CCG----GGGCG-------GGUAGCGGC-UGCG- -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 36864 | 0.7 | 0.190686 |
Target: 5'- uGCGccguuGCuGGCaCCGCCCG-CGCCGACGa -3' miRNA: 3'- -CGC-----CG-CCGgGGCGGGUaGCGGCUGCg -5' |
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23417 | 5' | -65 | NC_005259.1 | + | 42919 | 0.7 | 0.190686 |
Target: 5'- uUGGUGGCCUUgagcaugagGCCC-UCGCCGugGg -3' miRNA: 3'- cGCCGCCGGGG---------CGGGuAGCGGCugCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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