Results 101 - 105 of 105 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 23417 | 5' | -65 | NC_005259.1 | + | 60438 | 0.76 | 0.066646 |
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Target: 5'- cGgGGCGGCCaCGCCCGacaccUCGauuCCGACGCu -3' miRNA: 3'- -CgCCGCCGGgGCGGGU-----AGC---GGCUGCG- -5' |
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| 23417 | 5' | -65 | NC_005259.1 | + | 60345 | 0.77 | 0.058385 |
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Target: 5'- gGCGGCgaucaggucgaGGCCCUGCCCGaaaucccgccaaUCGCCGGacaGCg -3' miRNA: 3'- -CGCCG-----------CCGGGGCGGGU------------AGCGGCUg--CG- -5' |
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| 23417 | 5' | -65 | NC_005259.1 | + | 26674 | 0.77 | 0.053914 |
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Target: 5'- cCGGCGGCagCCCGCCCAUCGa-GGCGg -3' miRNA: 3'- cGCCGCCG--GGGCGGGUAGCggCUGCg -5' |
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| 23417 | 5' | -65 | NC_005259.1 | + | 22642 | 0.79 | 0.042408 |
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Target: 5'- cGCGuCGGUCgacgCCGCCCAccacaUCGCCGACGCa -3' miRNA: 3'- -CGCcGCCGG----GGCGGGU-----AGCGGCUGCG- -5' |
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| 23417 | 5' | -65 | NC_005259.1 | + | 19860 | 0.79 | 0.040198 |
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Target: 5'- uGUGGCGcucGCgCCCGCCgGgaUCGCCGACGCc -3' miRNA: 3'- -CGCCGC---CG-GGGCGGgU--AGCGGCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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