Results 101 - 105 of 105 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23417 | 5' | -65 | NC_005259.1 | + | 63612 | 0.67 | 0.299289 |
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Target: 5'- aUGGCGGCCaccgaCGCCUgauagAUCaUCGugGCg -3' miRNA: 3'- cGCCGCCGGg----GCGGG-----UAGcGGCugCG- -5' |
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| 23417 | 5' | -65 | NC_005259.1 | + | 66274 | 0.67 | 0.292536 |
|
Target: 5'- gGCGGCGGCUCaCGCcgccaCCAUCcacuCUGcGCGCa -3' miRNA: 3'- -CGCCGCCGGG-GCG-----GGUAGc---GGC-UGCG- -5' |
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| 23417 | 5' | -65 | NC_005259.1 | + | 67167 | 0.66 | 0.327503 |
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Target: 5'- gGUGGCGGCCaugCCGCCgAUgaUGCC--CGCc -3' miRNA: 3'- -CGCCGCCGG---GGCGGgUA--GCGGcuGCG- -5' |
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| 23417 | 5' | -65 | NC_005259.1 | + | 67980 | 0.7 | 0.186055 |
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Target: 5'- aGCGGCguGGCCaCCGCCgCGagCGUCGACu- -3' miRNA: 3'- -CGCCG--CCGG-GGCGG-GUa-GCGGCUGcg -5' |
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| 23417 | 5' | -65 | NC_005259.1 | + | 68849 | 0.66 | 0.35764 |
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Target: 5'- -aGGUGGgCCaucaugucgacuUGCCCG-CGCCgGGCGCg -3' miRNA: 3'- cgCCGCCgGG------------GCGGGUaGCGG-CUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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