miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23417 5' -65 NC_005259.1 + 52119 0.68 0.237068
Target:  5'- aGCGGCaauCUCCGCaCCGccguccggcaccUCGCCGAgGCa -3'
miRNA:   3'- -CGCCGcc-GGGGCG-GGU------------AGCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 51437 0.67 0.313156
Target:  5'- -gGGCGGgCCacgggGCCUcgCGCCGAUagaGCu -3'
miRNA:   3'- cgCCGCCgGGg----CGGGuaGCGGCUG---CG- -5'
23417 5' -65 NC_005259.1 + 50682 0.66 0.342332
Target:  5'- uCGGUgccgacgaGGCgCUGCUCGUCGUCG-CGCu -3'
miRNA:   3'- cGCCG--------CCGgGGCGGGUAGCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 50373 0.66 0.327503
Target:  5'- uCGGCGagaaaCUCgGCCCAcgugucgcggcUCGCCGAgCGCg -3'
miRNA:   3'- cGCCGCc----GGGgCGGGU-----------AGCGGCU-GCG- -5'
23417 5' -65 NC_005259.1 + 49633 0.66 0.342332
Target:  5'- uCGGCGGCa--GCCgCGUCGgCGAUGg -3'
miRNA:   3'- cGCCGCCGgggCGG-GUAGCgGCUGCg -5'
23417 5' -65 NC_005259.1 + 49435 0.66 0.349927
Target:  5'- cCGGCGaGCgCCGCCUugGUCggcaGCCgGAUGCc -3'
miRNA:   3'- cGCCGC-CGgGGCGGG--UAG----CGG-CUGCG- -5'
23417 5' -65 NC_005259.1 + 47951 0.66 0.327503
Target:  5'- aCGGCGGUgCCgaugGCCgCcgCGCCGccCGCg -3'
miRNA:   3'- cGCCGCCGgGG----CGG-GuaGCGGCu-GCG- -5'
23417 5' -65 NC_005259.1 + 47897 0.66 0.334117
Target:  5'- aGCGuCGGCUCguugagCGCCUugauggcGUCGCCGAgGCc -3'
miRNA:   3'- -CGCcGCCGGG------GCGGG-------UAGCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 46675 0.68 0.242768
Target:  5'- uCGGCGaGCUCgGCCUgagcCGCCGcCGCg -3'
miRNA:   3'- cGCCGC-CGGGgCGGGua--GCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 46575 0.68 0.246826
Target:  5'- cGCGGCGucgaccGCgCCGCCCGaggcgagcagcgcgUCGuuGGCGg -3'
miRNA:   3'- -CGCCGC------CGgGGCGGGU--------------AGCggCUGCg -5'
23417 5' -65 NC_005259.1 + 45508 0.72 0.12769
Target:  5'- cGCuGUGGCCaCCGCgCCGguguuggcCGCCGugGCu -3'
miRNA:   3'- -CGcCGCCGG-GGCG-GGUa-------GCGGCugCG- -5'
23417 5' -65 NC_005259.1 + 45337 0.66 0.35764
Target:  5'- cGUGGCcuGCgCCGCCUGg-GCCGcCGCg -3'
miRNA:   3'- -CGCCGc-CGgGGCGGGUagCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 44733 0.67 0.285902
Target:  5'- gGCaGCGcGCCCuCGaCCG-CGCCGAgGCu -3'
miRNA:   3'- -CGcCGC-CGGG-GCgGGUaGCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 44506 0.66 0.334858
Target:  5'- cCGGgGuGCCCUGgCCAcccaCGCCGcCGCc -3'
miRNA:   3'- cGCCgC-CGGGGCgGGUa---GCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 44373 0.66 0.327503
Target:  5'- -aGGCucGCCacaCCGCCCAugaugUCGCCGA-GCa -3'
miRNA:   3'- cgCCGc-CGG---GGCGGGU-----AGCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 43962 0.67 0.310344
Target:  5'- gGCGG-GGCCgCCGCCUgaccgagggcggUGCCGAUGg -3'
miRNA:   3'- -CGCCgCCGG-GGCGGGua----------GCGGCUGCg -5'
23417 5' -65 NC_005259.1 + 43732 0.66 0.35764
Target:  5'- aUGGCGGCCaugCCGCCga--GCCGG-GCa -3'
miRNA:   3'- cGCCGCCGG---GGCGGguagCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 43419 0.68 0.260554
Target:  5'- gGCGGCGGuuuCCUCGCUCGacUgGCUG-CGCu -3'
miRNA:   3'- -CGCCGCC---GGGGCGGGU--AgCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 43264 0.69 0.217471
Target:  5'- cCGG-GuGCCUgagaguugaccgcagCGCCCGcCGCCGACGCg -3'
miRNA:   3'- cGCCgC-CGGG---------------GCGGGUaGCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 43198 0.69 0.220638
Target:  5'- uCGGCGGCgaugucgacgCCCGCCUgaccCGCCGA-GCu -3'
miRNA:   3'- cGCCGCCG----------GGGCGGGua--GCGGCUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.